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Group: cis-regulatory-evolution - with tag fungi [25 articles]

Neue Artikel von Mitliedern der Gruppe cis-regulatory-evolution Gruppe with tag fungi
  • The yeast coexpression network has a small-world, scale-free architecture and can be explained by a simple model.
    EMBO reports, Vol. 5, No. 3. (March 2004), pp. 280-284.
    by V van Noort, B Snel, MA Huynen
    posted to duplication expression fungi by cisevol to the group cis-regulatory-evolution on 2008-07-23 09:01:02 as **
  • Gene co-regulation is highly conserved in the evolution of eukaryotes and prokaryotes.
    Nucleic Acids Res, Vol. 32, No. 16. (2004), pp. 4725-4731.
    by B Snel, V van Noort, MA Huynen
    posted to bacteria duplication expression fungi worms by cisevol to the group cis-regulatory-evolution on 2008-07-23 09:00:06 as ** along with 1 person bjorns
  • Functional Analysis of Gene Duplications in Saccharomyces cerevisiae
    Genetics, Vol. 175, No. 2. (1 February 2007), pp. 933-943.
    by Yuanfang Guan, Maitreya J Dunham, Olga G Troyanskaya
    posted to cis-regulatory duplication fungi by cisevol to the group cis-regulatory-evolution on 2008-07-22 20:17:40 as ** along with 3 people TaqSys csaveanu carlk
  • Retrotransposon Tf1 is targeted to Pol II promoters by transcription activators.
    Molecular cell, Vol. 30, No. 1. (11 April 2008), pp. 98-107.
    by YE Leem, TL Ripmaster, FD Kelly, H Ebina, ME Heincelman, K Zhang, SI Grewal, CS Hoffman, HL Levin
    posted to cis-regulatory expression fungi by cisevol to the group cis-regulatory-evolution on 2008-05-10 09:06:08 as ** along with 1 group BergmanLab
  • Genetic Properties Influencing the Evolvability of Gene Expression.
    Science (24 May 2007)
    by Christian R R Landry, Bernardo Lemos, Scott A A Rifkin, W J J Dickinson, Daniel L L Hartl
    posted to cis-regulatory fungi microarray by cisevol to the group cis-regulatory-evolution on 2008-02-18 19:22:20 as ** along with 10 people and 2 groups jjray brant balicea sebastien_vigneau grahamc emarker heliopais caseybrown emptyhb klo EisenLab ParkinsonLab_at_MaRS
  • On the relation between promoter divergence and gene expression evolution
    Mol Syst Biol, Vol. 4 (15 January 2008)
    by Itay Tirosh, Adina Weinberger, Dana Bezalel, Mark Kaganovich, Naama Barkai
    posted to cis-regulatory fungi microarray by cisevol to the group cis-regulatory-evolution on 2008-01-30 20:35:13 as ** along with 8 people and 1 group balicea kengg zwang biomcgary caseybrown renatomilani mclarenv Jporci BergmanLab
  • Evolution of alternative transcriptional circuits with identical logic
    Nature, Vol. 443, No. 7110. (2006), pp. 415-420.
    by Annie E Tsong, Brian B Tuch, Hao Li, Alexander D Johnson
    posted to cis-regulatory fungi by cisevol to the group cis-regulatory-evolution on 2008-01-12 15:13:22 as ** along with 6 people and 3 groups marcius brant adepace aswin srfairclough emptyhb EisenLab BioinfoCIPF SGU-CIPF
  • Evolution of a combinatorial transcriptional circuit: a case study in yeasts.
    Cell, Vol. 115, No. 4. (14 November 2003), pp. 389-399.
    by AE Tsong, MG Miller, RM Raisner, AD Johnson
    posted to cis-regulatory fungi by cisevol to the group cis-regulatory-evolution on 2008-01-12 15:12:46 as **
  • Genome-wide regulatory complexity in yeast promoters: Separation of functionally conserved and neutral sequence.
    Genome Res, Vol. 15, No. 2. (February 2005), pp. 205-213.
    by CS Chin, JH Chuang, H Li
    posted to cis-regulatory fungi by cisevol to the group cis-regulatory-evolution on 2007-10-24 17:56:37 as ** along with 3 people briann lusk nklee
  • Genomic Evolution of the Proteasome System Among Hemiascomycetous Yeasts.
    J Mol Evol (2 October 2007)
    by Gertrud Mannhaupt, Horst Feldmann
    posted to cis-regulatory fungi by cisevol to the group cis-regulatory-evolution on 2007-10-21 19:16:27 as **
  • Rate of promoter class turn-over in yeast evolution.
    BMC Evol Biol, Vol. 6 (2006)
    by GA Bazykin, AS Kondrashov
    posted to cis-regulatory fungi by cisevol to the group cis-regulatory-evolution on 2007-10-21 19:10:41 as **
  • Finding functional features in Saccharomyces genomes by phylogenetic footprinting.
    Science, Vol. 301, No. 5629. (4 July 2003), pp. 71-76.
    by P Cliften, P Sudarsanam, A Desikan, L Fulton, B Fulton, J Majors, R Waterston, BA Cohen, M Johnston
    posted to cis-regulatory fungi by cisevol to the group cis-regulatory-evolution on 2007-10-21 19:08:57 as ** along with 4 people evaf chad_davis dquest Eonwe
  • Frequent Gain and Loss of Functional Transcription Factor Binding Sites
    PLoS Computational Biology, Vol. 3, No. 5. (1 May 2007), e99.
    by Scott W Doniger, Justin C Fay
    posted to cis-regulatory fungi model by cisevol to the group cis-regulatory-evolution on 2007-10-21 19:07:38 as ** along with 7 people and 1 group brant dpollard sebastien_vigneau zwang maximilianh xili03 emptyhb EisenLab
  • Identification of functional transcription factor binding sites using closely related Saccharomyces species.
    Genome Res, Vol. 15, No. 5. (May 2005), pp. 701-709.
    by SW Doniger, J Huh, JC Fay
    posted to cis-regulatory fungi by cisevol to the group cis-regulatory-evolution on 2007-10-21 19:07:30 as **
  • Conservation and Evolution of Cis-Regulatory Systems in Ascomycete Fungi.
    PLoS Biol, Vol. 2, No. 12. (9 November 2004)
    by Audrey P P Gasch, Alan M M Moses, Derek Y Y Chiang, Hunter B B Fraser, Mark Berardini, Michael B B Eisen
    posted to cis-regulatory fungi by cisevol to the group cis-regulatory-evolution on 2007-10-21 19:06:38 as ** along with 4 people and 2 groups mbeisen tsackton nickluscombe lusk EisenLab EBI-regulation
  • Phylogeny based discovery of regulatory elements.
    BMC Bioinformatics, Vol. 7 (2006)
    by J Gertz, JC Fay, BA Cohen
    posted to cis-regulatory fungi model by cisevol to the group cis-regulatory-evolution on 2007-10-21 19:06:33 as ** along with 2 people and 1 group indigoviolet dquest EisenLab
  • Sequencing and comparison of yeast species to identify genes and regulatory elements.
    Nature, Vol. 423, No. 6937. (15 May 2003), pp. 241-254.
    by M Kellis, N Patterson, M Endrizzi, B Birren, ES Lander
    posted to cis-regulatory fungi by cisevol to the group cis-regulatory-evolution on 2007-10-21 18:53:19 as ** along with 8 people and 3 groups evaf RMGraze balajis opheliav dchughes dquest franklin azazello G4ID Genetics-of-Gambling MBLAB
  • MONKEY: identifying conserved transcription-factor binding sites in multiple alignments using a binding site-specific evolutionary model.
    Genome Biol, Vol. 5, No. 12. (2004)
    by AM Moses, DY Chiang, DA Pollard, VN Iyer, MB Eisen
    posted to cis-regulatory fungi model by cisevol to the group cis-regulatory-evolution on 2007-10-21 18:46:18 as ** along with 4 people and 1 group tuck indigoviolet lusk Garamonfok EisenLab
  • Position specific variation in the rate of evolution in transcription factor binding sites.
    BMC Evol Biol, Vol. 3, No. 1. (28 August 2003)
    by AM Moses, DY Chiang, M Kellis, ES Lander, MB Eisen
    posted to cis-regulatory fungi model by cisevol to the group cis-regulatory-evolution on 2007-10-21 18:46:07 as ** along with 6 people and 1 group briann dpollard adepace lusk nklee emptyhb EisenLab
  • The Role of Cis-Regulatory Motifs and Genetical Control of Expression in the Divergence of Yeast Duplicate Genes.
    Mol Biol Evol (10 September 2007)
    by Lindsey J J Leach, Ze Zhang, Chenqi Q Q Lu, Michael J J Kearsey, Zewei W W Luo
    posted to cis-regulatory fungi by cisevol to the group cis-regulatory-evolution on 2007-10-20 11:37:49 as ** along with 1 person and 1 group brant EisenLab
  • Expression evolution in yeast genes of single-input modules is mainly due to changes in trans-acting factors.
    Genome Res (5 July 2007)
    by Daryi Wang, Huang-Mo M Sung, Tzi-Yuan Y Wang, Chih-Jen J Huang, Peggy Yang, Tiffany Chang, Yang-Chao C Wang, Da-Lun L Tseng, Jen-Pey P Wu, Tso-Ching C Lee, Ming-Che C Shih, Wen-Hsiung H Li
    posted to cis-regulatory fungi by cisevol to the group cis-regulatory-evolution on 2007-10-20 11:34:11 as ** along with 4 people and 2 groups dpollard jwestbrook emarker emptyhb EisenLab King_Lab
  • Divergence of Transcription Factor Binding Sites Across Related Yeast Species
    Science, Vol. 317, No. 5839. (10 August 2007), pp. 815-819.
    by Anthony R Borneman, Tara A Gianoulis, Zhengdong D Zhang, Haiyuan Yu, Joel Rozowsky, Michael R Seringhaus, Lu Y Wang, Mark Gerstein, Michael Snyder
    posted to cis-regulatory fungi by dpollard to the group cis-regulatory-evolution on 2007-10-19 21:48:49 as read along with 18 people and 1 group caseybrown bryankr aalibes chad_davis djkt mikaelhuss lusk cjeans sujaikumar zwang GustavoLacerda Jporci maximilianh cisevol njcitulike emptyhb nklee anka EisenLab
  • Gene duplication and the adaptive evolution of a classic genetic switch
    Nature, Vol. 449, No. 7163. (11 October 2007), pp. 677-681.
    by Chris T Hittinger, Sean B Carroll
    posted to cis-regulatory fungi by dpollard to the group cis-regulatory-evolution on 2007-10-19 20:13:01 as read along with 9 people and 1 group mcphee dchughes djkt biomcgary blobbybirdman kjlipin skumagai clearbluespring bpcusack EisenLab
  • Comparative analysis indicates regulatory neofunctionalization of yeast duplicates
    Genome Biology, Vol. 8 (05 April 2007), R50.
    by Itay Tirosh, Naama Barkai
    posted to cis-regulatory duplication fungi by cisevol to the group cis-regulatory-evolution on 2007-10-18 10:54:00 as ** along with 3 people and 1 group adepace stajich ajpowell EisenLab
  • Genetic interactions between polymorphisms that affect gene expression in yeast
    Nature, Vol. 436, No. 7051., pp. 701-703.
    by Rachel B Brem, John D Storey, Jacqueline Whittle, Leonid Kruglyak
    posted to cis-regulatory fungi variation by cisevol to the group cis-regulatory-evolution on 2007-10-18 08:59:52 as ** along with 4 people and 2 groups lp2 JAShapiro dpollard mrockman EisenLab RockmanLab
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