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Group: baker-group - with tag metalloregulation [86 articles]

Neue Artikel von Mitliedern der Gruppe baker-group Gruppe with tag metalloregulation
  • Sub-micromolar affinity of Escherichia coli NikR for Ni(II)
    Chemical Communications (2008), pp. 1813-1815.
    by REM Diederix, C Fauquant, A Rodrigue, MA Mandrand-Berthelot, I Michaud-Soret
    posted to metalloregulation by sobolevnrm to the group baker-group on 2008-06-26 11:54:11 as read
  • Molecular Dynamics Simulation of the Escherichia coli NikR Protein: Equilibrium Conformational Fluctuations Reveal Interdomain Allosteric Communication Pathways
    Journal of Molecular Biology, Vol. In Press, Corrected Proof
    by Michael J Bradley, Peter T Chivers, Nathan A Baker
    posted to allostery metalloregulation molecular_dynamics by sobolevnrm to the group baker-group on 2008-04-26 14:52:57 as read along with 2 people and 1 group skoddet barry structural_bioinformatics
  • Metal-Coupled Folding of Cys2His2 Zinc-Finger
    J. Am. Chem. Soc., Vol. 130, No. 3. (23 January 2008), pp. 892-900.
    by W Li, J Zhang, J Wang, W Wang
    posted to metalloregulation molecular_simulation protein_folding by sobolevnrm to the group baker-group on 2008-02-20 12:47:57 as read
  • The Intrinsic Dynamics and Function of Nickel Binding Regulatory Protein: Insights from Elastic Network Analysis
    Biophys. J. (28 January 2008), biophysj.107.115576.
    by Guanglei Cui, Kenneth Merz
    posted to metalloregulation molecular_simulation quasiharmonic-models_elastic-network_gnm_nma_pca_etc by sobolevnrm to the group baker-group on 2008-02-04 14:29:37 as read along with 1 person aqeel
  • Structural Basis of the Metal Specificity for Nickel Regulatory Protein NikR,
    Biochemistry (15 January 2008)
    by CM Phillips, ER Schreiter, Y Guo, SC Wang, DB Zamble, CL Drennan
    posted to metalloregulation structure by sobolevnrm to the group baker-group on 2008-01-15 12:53:08 as read
  • Modeling of metal interaction geometries for protein-ligand docking
    Proteins: Structure, Function, and Bioinformatics, Vol. 9999, No. 9999. (2007), NA.
    by Birte Seebeck, Ingo Reulecke, Andreas Kämper, Matthias Rarey
    posted to bioinformatics metalloregulation protein-ligand_interactions by sobolevnrm to the group baker-group on 2007-12-27 12:17:57 as read along with 1 person and 1 group arlam group
  • The N-terminal Arm of the Helicobacter pylori Ni2+-dependent Transcription Factor NikR Is Required for Specific DNA Binding
    J. Biol. Chem., Vol. 282, No. 28. (13 July 2007), pp. 20365-20375.
    by Erin L Benanti, Peter T Chivers
    posted to metalloregulation by sobolevnrm to the group baker-group on 2007-09-17 01:50:31 as read
  • Prediction of transition metal-binding sites from apo protein structures
    Proteins (in press)
    by M Babor, S Gerzon, B Raveh, V Sobolev, M Edelman
    posted to structure_prediction software metalloregulation bioinformatics by sobolevnrm to the group baker-group on 2007-08-06 14:33:01 as read
  • Metal sensor proteins: nature's metalloregulated allosteric switches
    Dalton Transactions (2007), pp. 3107-3120.
    by DP Giedroc, AI Arunkumar
    posted to metalloregulation by sobolevnrm to the group baker-group on 2007-07-19 13:30:05 as read
  • Parameter Calibration of Transition-Metal Elements for the Spin-Polarized Self-Consistent-Charge Density-Functional Tight-Binding (DFTB) Method: Sc, Ti, Fe, Co, and Ni
    Journal of Chemical Theory and Computation, Vol. 3, No. 4. (2007), pp. 1349-67.
    by G Zheng, HA Witek, Bobadova P Parvanova, S Irle, DG Musaev, R Prabhakar, K Morokuma, M Lundberg, M Elstner, C Köhler, T Frauenheim
    posted to quantum_mechanics molecular_simulation metalloregulation by sobolevnrm to the group baker-group on 2007-07-15 22:17:37 as read
  • The Ni2+ binding properties of Helicobacter pylori NikR
    Chemical Communications (in press)
    by B Zambelli, M Bellucci, A Danielli, V Scarlato, S Ciurli
    posted to metalloregulation by sobolevnrm to the group baker-group on 2007-07-02 13:18:46 as read
  • The N-terminal arm of the Helicobacter pylori Ni2+-dependent transcription factor NikR is required for specific DNA-binding
    Journal of Biological Chemistry (in press)
    by EL Benanti, PT Chivers
    posted to metalloregulation by sobolevnrm to the group baker-group on 2007-05-29 12:22:59 as read
  • NikA Binds Heme: A New Role for an Escherichia coli Periplasmic Nickel-Binding Protein
    Biochemistry, Vol. 46, No. 17. (2007), pp. 5030-7.
    by M Shepard, MD Heath, RK Poole
    posted to metalloregulation by sobolevnrm to the group baker-group on 2007-05-25 14:37:08 as read
  • Networks of Coupled Rotators: Relationship between Structures and Internal Dynamics in Metal-Binding Proteins. Applications to apo- and holo-Calbindin
    Journal of the American Chemical Society, Vol. 129, No. 16. (2007), pp. 4998-5006.
    by A Dhulesia, D Abergel, G Bodenhausen
    posted to quasiharmonic-models_elastic-network_gnm_nma_pca_etc metalloregulation by sobolevnrm to the group baker-group on 2007-05-25 14:37:07 as read
  • Nickel-Specific Response in the Transcriptional Regulator, Escherichia coli NikR
    Journal of the American Chemical Society (in press)
    by S Leitch, MJ Bradley, JL Rowe, PT Chivers, MJ Maroney
    posted to metalloregulation by sobolevnrm to the group baker-group on 2007-05-25 14:37:06 as read
  • Conservation of metal-coordinating residues
    Proteins (in press)
    by IN Kasampalidis, I Pitas, K Lyroudia
    posted to metalloregulation bioinformatics by sobolevnrm to the group baker-group on 2007-05-25 14:37:06 as read
  • Establishing the entatic state in folding metallated Pseudomonas aeruginosa azurin
    Proceedings of the National Academy of Sciences of the United States of America, Vol. 104, No. 9. (2007), pp. 3159-64.
    by C Zong, CJ Wilson, T Shen, Wittung P Stafshede, SL Mayo, PG Wolynes
    posted to protein_folding protein_engineering metalloregulation allostery by sobolevnrm to the group baker-group on 2007-05-25 14:36:48 as read
  • Characterization of the Helicobacter pylori NikR-PureA DNA Interaction: Metal Ion Requirements and Sequence Specificity
    Biochemistry (in press)
    by NS Dosanjh, NA Hammerbacher, SLJ Michel
    posted to metalloregulation by sobolevnrm to the group baker-group on 2007-05-25 14:36:28 as read
  • The ACT Domain: A Small Molecule Binding Domain and Its Role as a Common Regulatory Element
    Journal of Biological Chemistry, Vol. 281, No. 45. (2006), pp. 33825-9.
    by GA Grant
    posted to structure metalloregulation allostery by sobolevnrm to the group baker-group on 2007-05-25 14:36:04 as read
  • Nickel-binding and accessory proteins facilitating Ni-enzyme maturation in Helicobacter pylori
    BioMetals (in press)
    by RJ Maier, SL Benoit, S Seshadri
    posted to metalloregulation by sobolevnrm to the group baker-group on 2007-05-25 14:36:04 as read
  • Modeling the charge distribution at metal sites in proteins for molecular dynamics simulations
    Journal of Structural Biology (in press)
    by Dal M Peraro, K Spiegel, G Lamoureux, M De Vivo, WF Degrado, ML Klein
    posted to quantum_mechanics metalloregulation by sobolevnrm to the group baker-group on 2007-05-25 14:36:04 as read
  • Iron(II) triggered conformational changes in Escherichia coli fur upon DNA binding: a study using molecular modeling
    Journal of Molecular Graphics and Modelling, Vol. 25, No. 2. (2006), pp. 234-46.
    by MY Hamed, Al S Jabour
    posted to molecular_dynamics metalloregulation by sobolevnrm to the group baker-group on 2007-05-25 14:23:19 as read
  • Nickel homeostasis in Escherichia coli âthe rcnR-rcnA efflux pathway and its linkage to NikR function
    Molecular Microbiology, Vol. 62, No. 1. (2006), pp. 252-62.
    by JS Iwig, JL Rowe, PT Chivers
    posted to metalloregulation by sobolevnrm to the group baker-group on 2007-05-25 14:23:19 as read
  • NikR-operator complex structure and the mechanism of repressor activation by metal ions
    Proceedings of the National Academy of Sciences of the United States of America, Vol. 103, No. 37. (2006), pp. 13676-81.
    by ER Schreiter, SC Wang, DB Zamble, CL Drennan
    posted to structure metalloregulation by sobolevnrm to the group baker-group on 2007-05-25 14:23:18 as read
  • Metal-Protein Interactions: Structure Information from Ni2+-Induced Pseudocontact Shifts in a Native Nonmetalloprotein
    Biochemistry, Vol. 45, No. 29. (2006), pp. 8782-7.
    by MR Jensen, JJ Led
    posted to metalloregulation by sobolevnrm to the group baker-group on 2007-05-25 14:23:17 as read
  • Quantum mechanical and molecular dynamics simulations of ureases and Zn beta-lactamases
    Journal of Computational Chemistry, Vol. 27, No. 12. (2006), pp. 1240-62.
    by G Estiu, D Suã!'rez, Jr
    posted to molecular_dynamics metalloregulation by sobolevnrm to the group baker-group on 2007-05-25 14:23:17 as read
  • Characterization of Ni transport into brush border membrane vesicles (BBMVs) isolated from the kidney of the freshwater rainbow trout (Oncorhynchus mykiss)
    Biochimica et biophysica acta (BBA) - Biomembranes, Vol. 1758, No. 1. (2006), pp. 74-84.
    by EF Pane, CN Glover, M Patel, CM Wood
    posted to metalloregulation biomembranes by sobolevnrm to the group baker-group on 2007-05-25 14:22:19 as read
  • Microbial nickel metalloregulation: NikRs for nickel ions
    Current Opinion in Chemical Biology (in press)
    by NS Dosanjh, SLJ Michel
    posted to metalloregulation by sobolevnrm to the group baker-group on 2007-05-25 14:19:55 as read
  • LigandâMetal Ion Binding to Proteins: Investigation by ESI Mass Spectrometry
    Methods in Enzymology, Vol. 402 (2005), pp. 361-89.
    by N Potier, H Rogniaux, G Chevreux, A Van Dorsselaer
    posted to metalloregulation experimental_methodology by sobolevnrm to the group baker-group on 2007-05-25 14:19:27 as read
  • Reconstruction of regulatory and metabolic pathways in metal-reducing δ-proteobacteria
    Genome Biology, Vol. 5, No. 11. (2004)
    by DA Rodionov, I Dubchak, A Arkin, E Alm, MS Gelfand
    posted to metalloregulation by sobolevnrm to the group baker-group on 2007-05-25 14:19:26 as read
  • The metal- and DNA-binding activities of Helicobacter pylori NikR
    Journal of Inorganic Biochemistry (in press)
    by LO Abraham, Y Li, DB Zamble
    posted to metalloregulation by sobolevnrm to the group baker-group on 2007-05-25 14:19:26 as read
  • Structural Studies of an Engineered Zinc Biosensor Reveal an Unanticipated Mode of Zinc Binding
    Journal of Molecular Biology, Vol. 354, No. 4. (2005), pp. 829-40.
    by PG Telmer, BH Shilton
    posted to protein_engineering metalloregulation by sobolevnrm to the group baker-group on 2007-05-25 14:19:26 as read
  • The Nickel-Responsive Regulator NikR Controls Activation and Repression of Gene Transcription in Helicobacter pylori
    Infection and Immunity, Vol. 73, No. 11. (2005), pp. 7252-8.
    by FD Ernst, EJ Kuipers, A Heijens, R Sarwari, J Stoof, CW Penn, JG Kusters, AHM van Vliet
    posted to metalloregulation by sobolevnrm to the group baker-group on 2007-05-25 14:19:26 as read
  • In Vitro Analysis of Protein-Operator Interactions of the NikR and Fur Metal-Responsive Regulators of Coregulated Genes in Helicobacter pylori
    Journal of Bacteriology, Vol. 187, No. 22. (2005), pp. 7703-15.
    by I Delany, R Ieva, A Soragni, M Hilleringmann, R Rappuoli, V Scarlato
    posted to metalloregulation by sobolevnrm to the group baker-group on 2007-05-25 14:19:26 as read
  • Understanding How Cells Allocate Metals Using Metal Sensors and Metallochaperones
    Accounts of Chemical Research, Vol. 38, No. 10. (2005), pp. 775-83.
    by S Tottey, DR Harvie, NJ Robinson
    posted to metalloregulation by sobolevnrm to the group baker-group on 2007-05-25 14:18:49 as read
  • Single-Atom Test of All-Atom Empirical Potentials: Fe in Myoglobin
    Journal of Physical Chemistry B, Vol. 190, No. 40. (2005), pp. 18983-7.
    by BK Rai, EW Prohofsky, SM Durbin
    posted to quantum_mechanics molecular_dynamics metalloregulation by sobolevnrm to the group baker-group on 2007-05-25 14:18:44 as read
  • Acid-Induced Activation of the Urease Promoters Is Mediated Directly by the ArsRS Two-Component System of Helicobacter pylori
    Infection and Immunity, Vol. 73, No. 10. (2005), pp. 6437-45.
    by M Pflock, S Kennard, I Delany, V Scarlato, D Beier
    posted to metalloregulation by sobolevnrm to the group baker-group on 2007-05-25 14:18:43 as read
  • Structural Determinants of Metal Selectivity in Prokaryotic Metal-responsive Transcriptional Regulators
    Biometals, Vol. 18, No. 4. (2005), pp. 413-28.
    by MA Pennella, DP Giedroc
    posted to metalloregulation by sobolevnrm to the group baker-group on 2007-05-25 14:18:43 as read
  • Complex Transcriptional Control Links NikABCDE-Dependent Nickel Transport with Hydrogenase Expression in Escherichia coli
    Journal of Bacteriology, Vol. 187, No. 18. (2005), pp. 6317-23.
    by JL Rowe, GL Starnes, PT Chivers
    posted to metalloregulation by sobolevnrm to the group baker-group on 2007-05-25 14:18:43 as read
  • Protease digestion analysis of Escherichia coli NikR: evidence for conformational stabilization with Ni(II)
    Journal of Biological Inorganic Chemistry (2005)
    by AV Dias, DB Zamble
    posted to metalloregulation by sobolevnrm to the group baker-group on 2007-05-25 14:18:43 as read
  • Structure of Pyrococus horikoshii NikR: nickel sensing and implications for the regulation of DNA recognition.
    Journal of Molecular Biology, Vol. 348, No. 3. (2005), pp. 597-607.
    by PT Chivers, TH Tahirov
    posted to structure metalloregulation by sobolevnrm to the group baker-group on 2007-05-25 14:15:19 as read
  • Structural insights into proteinâmetal ion partnerships
    Current Opinion in Structural Biology, Vol. 14, No. 6. (2004), pp. 765-74.
    by DP Barondeau, ED Getzoff
    posted to structure metalloregulation by sobolevnrm to the group baker-group on 2007-05-25 14:14:50 as read
  • Role of Lysine-256 in Citrobacter freundii Tyrosine Phenol-lyase in Monovalent Cation Activation
    Biochemistry, Vol. 43, No. 45. (2004), pp. 14412-9.
    by RS Phillips, HY Chen, D Shim, S Lima, K Tavakoli, B Sundararaju
    posted to metalloregulation biological_systems by sobolevnrm to the group baker-group on 2007-05-25 14:14:06 as read
  • Predicting Metal-binding Site Residues in Low-resolution Structural Models
    Journal of Molecular Biology, Vol. 342, No. 1. (2004), pp. 307-20.
    by JS Sodhi, K Bryson, LJ Mcguffin, JJ Ward, L Wernisch, DT Jones
    posted to protein-ligand_interactions metalloregulation electrostatics bioinformatics by sobolevnrm to the group baker-group on 2007-05-25 14:13:08 as read
  • Metal-Selective DNA-Binding Response of Escherichia coli NikR
    Biochemistry, Vol. 43, No. 31. (2004), pp. 10029-38.
    by SL Bloom, DB Zamble
    posted to protein-nucleic_acid_interactions metalloregulation by sobolevnrm to the group baker-group on 2007-05-25 14:12:47 as read
  • Selectivity of Metal Binding and Metal-Induced Stability of Escherichia coli NikR
    Biochemistry, Vol. 43, No. 31. (2004), pp. 10018-28.
    by SC Wang, AV Dias, SL Bloom, DB Zamble
    posted to protein-nucleic_acid_interactions metalloregulation by sobolevnrm to the group baker-group on 2007-05-25 14:12:47 as read
  • A hint to search for metalloproteins in gene banks
    Bioinformatics, Vol. 20, No. 9. (2004), pp. 1373-80.
    by C Andreini, I Bertini, A Rosato
    posted to metalloregulation bioinformatics by sobolevnrm to the group baker-group on 2007-05-25 14:10:27 as read
  • Regulation of High Affinity Nickel Uptake in Bacteria. Ni2+-DEPENDENT INTERACTION OF NikR WITH WILD-TYPE AND MUTANT OPERATOR SITES
    Journal of Biological Chemistry, Vol. 275, No. 26. (2000), pp. 19735-19741.
    by PT Chivers, RT Sauer
    posted to bibtex-import metalloregulation by sobolevnrm to the group baker-group on 2007-05-25 14:08:29 as read
  • A Copper-Bottomed Trafficking Solution
    Structure, Vol. 12 (2004), pp. 517-518.
    by MJ Sutcliffe
    posted to structure metalloregulation by sobolevnrm to the group baker-group on 2007-05-25 14:05:56 as read
  • Modular and Tunable Chemosensor Scaffold for Divalent Zinc
    Journal of the American Chemical Society, Vol. 125, No. 35. (2003)
    by MD Shults, DA Pearce, B Imperiali
    posted to metalloregulation experimental_methodology by sobolevnrm to the group baker-group on 2007-05-25 14:05:06 as read
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