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Group: baker-group - library [6169 articles]

Neue Artikel von Mitliedern der Gruppe baker-group Gruppe
  • On the application of the Arlequin method to the coupling of particle and continuum models
    Computational Mechanics, Vol. 42, No. 4. (2008), pp. 511-530.
    by Paul Bauman, Hachmi Dhia, Nadia Elkhodja, J Oden, Serge Prudhomme
    posted to mathematics mechanics multiscale by sobolevnrm to the group baker-group on 2008-07-25 12:06:05 as read
  • Liquid Crystalline Phase Behavior of High Molecular Weight DNA: A Comparative Study of the Influence of Metal Ions of Different Size, Charge and Binding Mode
    Biomacromolecules, Vol. 9, No. 7. (14 July 2008), pp. 1860-1869.
    by Neethu Sundaresan, Cherumuttathu H Suresh, Thresia Thomas, TJ Thomas, CKS Pillai
    posted to electrostatics nucleic_acids solvation by sobolevnrm to the group baker-group on 2008-07-25 12:02:47 as read
  • Salt-Mediated Electrostatics in the Association of TATA Binding Proteins to DNA: A Combined Molecular Mechanics/Poisson-Boltzmann Study
    Biophys. J., Vol. 94, No. 12. (15 June 2008), pp. 4634-4645.
    by Johan H Bredenberg, Cristina Russo, Marcia O Fenley
    posted to electrostatics protein-nucleic_acid_interactions solvation by sobolevnrm to the group baker-group on 2008-07-25 11:56:28 as read along with 1 person and 2 groups barry McCammon structural_bioinformatics
  • Interesting Structures: Education and Outreach at the RCSB Protein Data Bank
    PLoS Biology, Vol. 6, No. 5. (1 May 2008), e117.
    by Christine Zardecki
    posted to database structure teaching by sobolevnrm to the group baker-group on 2008-07-25 11:50:16 as read along with 1 person reyez
  • A stringent test of the cavity concept in continuum dielectrics
    The Journal of Chemical Physics, Vol. 107, No. 19. (1997), pp. 7975-7978.
    by Arno Papazyan, Arieh Warshel
    posted to electrostatics solvation by sobolevnrm to the group baker-group on 2008-07-24 12:44:14 as read
  • Continuum and Dipole-Lattice Models of Solvation
    J. Phys. Chem. B, Vol. 101, No. 51. (18 December 1997), pp. 11254-11264.
    by A Papazyan, A Warshel
    posted to electrostatics solvation by sobolevnrm to the group baker-group on 2008-07-24 12:43:04 as read
  • Effect of Solvent Discreteness on Solvation
    J. Phys. Chem. B, Vol. 102, No. 27. (2 July 1998), pp. 5348-5357.
    by A Papazyan, A Warshel
    posted to electrostatics solvation statistical_mechanics by sobolevnrm to the group baker-group on 2008-07-24 12:41:40 as read
  • Factor Va Alters the Conformation of the Na+-Binding Loop of Factor Xa in the Prothrombinase Complex
    Biochemistry, Vol. 47, No. 22. (3 June 2008), pp. 5976-5985.
    by Likui Yang, Chandrashekhara Manithody, Shabir H Qureshi, Alireza R Rezaie
    posted to thrombin by sobolevnrm to the group baker-group on 2008-07-24 12:13:59 as read
  • Modest stabilization by most hydrogen-bonded side-chain interactions in membrane proteins
    Nature (25 May 2008)
    by Nathan H Joh, Andrew Min, Salem Faham, Julian P Whitelegge, Duan Yang, Virgil L Woods, James U Bowie
    posted to protein_engineering protein_folding structure by sobolevnrm to the group baker-group on 2008-07-24 12:12:58 as read
  • Structural analysis of the essential self-cleaving type III secretion proteins EscU and SpaS
    Nature, Vol. 453, No. 7191., pp. 124-127.
    by Raz Zarivach, Wanyin Deng, Marija Vuckovic, Heather B Felise, Hai V Nguyen, Samuel I Miller, Brett B Finlay, Natalie CJ Strynadka
    posted to apbs structure by sobolevnrm to the group baker-group on 2008-07-24 12:11:50 as read along with 1 person neils
  • Lipid bilayer structure determined by the simultaneous analysis of neutron and x-ray scattering data
    Biophys. J. (23 May 2008), biophysj.108.132662.
    by Norbert Kucerka, John F Nagle, Jonathan N Sachs, Scott Feller, Jeremy Pencer, Andrew J Jackson, John Katsaras
    posted to biomembranes experimental_methodology by sobolevnrm to the group baker-group on 2008-07-24 12:08:34 as read along with 2 people paulschlesinger agrossfield
  • Membrane nanotubes: dynamic long-distance connections between animal cells
    Nature Reviews Molecular Cell Biology, Vol. 9, No. 6. (23 April 2008), pp. 431-436.
    by Daniel M Davis, Stefanie Sowinski
    posted to biomembranes by sobolevnrm to the group baker-group on 2008-07-24 11:51:21 as read along with 1 person lechristophe
  • A meshless, spectrally accurate, integral equation solver for molecular surface electrostatics
    J. Emerg. Technol. Comput. Syst., Vol. 4, No. 2. (April 2008), pp. 1-30.
    by Shih-Hsien Kuo, Bruce Tidor, Jacob White
    posted to electrostatics mathematics software solvation by sobolevnrm to the group baker-group on 2008-07-24 11:45:11 as read
  • Cholesterol Packing around Lipids with Saturated and Unsaturated Chains: A Simulation Study
    Langmuir (3 June 2008)
    by Sagar A Pandit, See-Wing Chiu, Eric Jakobsson, Ananth Grama, HL Scott
    posted to biomembranes ligand-membrane_interactions oxysterols by sobolevnrm to the group baker-group on 2008-07-23 12:15:33 as read along with 2 people paulschlesinger dimka
  • Computational Insights on the Competing Effects of Nitric Oxide in Regulating Apoptosis
    PLoS ONE, Vol. 3, No. 5. (28 May 2008), e2249.
    by Elife Z Bagci, Yoram Vodovotz, Timothy R Billiar, Bard Ermentrout, Ivet Bahar
    posted to nitric_oxide systems_biology by sobolevnrm to the group baker-group on 2008-07-23 12:11:10 as read
  • Harmonic averaging of smooth permittivity functions in finite-difference PoissonBoltzmann Electrostatics
    Theoretical Chemistry Accounts, Vol. 119, No. 5-6. (April 2008), pp. 421-427.
    by Kottmann, Stephen
    posted to electrostatics by sobolevnrm to the group baker-group on 2008-07-23 12:06:56 as read
  • Free-energy analysis of the molecular binding into lipid membrane with the method of energy representation
    The Journal of Chemical Physics, Vol. 128, No. 19. (2008)
    by Nobuyuki Matubayasi, Wataru Shinoda, Masaru Nakahara
    posted to biomembranes ligand-membrane_interactions solvation statistical_mechanics by sobolevnrm to the group baker-group on 2008-07-23 11:59:00 as read along with 2 people agrossfield paulschlesinger
  • Regulated Protein Denitrosylation by Cytosolic and Mitochondrial Thioredoxins
    Science, Vol. 320, No. 5879. (23 May 2008), pp. 1050-1054.
    by Moran Benhar, Michael T Forrester, Douglas T Hess, Jonathan S Stamler
    posted to nitric_oxide by sobolevnrm to the group baker-group on 2008-07-23 11:55:34 as read
  • BIOCHEMISTRY: SNO Removal
    Science, Vol. 320, No. 5879. (23 May 2008), pp. 1019-1020.
    by Arne Holmgren
    posted to nitric_oxide by sobolevnrm to the group baker-group on 2008-07-23 11:55:02 as read
  • Fluorescence Imaging of Membrane Dynamics
    Annual Review of Biomedical Engineering, Vol. 10, No. 1. (2008), pp. 311-338.
    by Jay T Groves, Raghuveer Parthasarathy, Martin B Forstner
    posted to biomembranes by sobolevnrm to the group baker-group on 2008-07-23 11:45:48 as read along with 1 person zwang
  • Ontology-based knowledge representation for bioinformatics
    Brief Bioinform, Vol. 1, No. 4. (1 January 2000), pp. 398-414.
    by Robert Stevens, Carole A Goble, Sean Bechhofer
    posted to bioinformatics ontology by sobolevnrm to the group baker-group on 2008-07-22 12:45:21 as read along with 4 people and 1 group irenas PunkRock gmonce alanrw dbk-lab
  • Where are the semantics in the semantic web?
    AI Mag., Vol. 24, No. 3. (September 2003), pp. 25-36.
    by Michael Uschold
    posted to bioinformatics ontology by sobolevnrm to the group baker-group on 2008-07-22 12:40:41 as read along with 8 people and 3 groups freecia wcrosbie dullhunk hpiwowar wasp mzygmunt RafG SeminarIW Semantic-Social-Networks Wikipedia CoP_CMS
  • Dimensions of knowledge sharing and reuse
    Computers and Biomedical Research, Vol. 25, No. 5. (October 1992), pp. 435-467.
    by Mark A Musen
    posted to bioinformatics ontology software by sobolevnrm to the group baker-group on 2008-07-22 12:39:45 as read
  • Overview and utilization of the NCI Thesaurus
    Comparative and Functional Genomics, Vol. 5, No. 8. (December 2004), pp. 648-654.
    by Fragoso Gilberto, De C Sherri, Haber Margaret, Hartel Frank, Wright Larry
    posted to bioinformatics ontology by sobolevnrm to the group baker-group on 2008-07-22 12:22:49 as read
  • Sequence Ontology annotation guide: Conference Papers
    Comp. Funct. Genomics, Vol. 5, No. 8. (December 2004), pp. 642-647.
    by Karen Eilbeck, Suzanna E Lewis
    posted to bioinformatics ontology by sobolevnrm to the group baker-group on 2008-07-22 12:21:37 as read along with 1 person vlachmore
  • Statistical mechanics of polar fluids in electric fields
    The Journal of Chemical Physics, Vol. 72, No. 3. (1980), pp. 1597-1613.
    by Ho JS Ye, G Stell
    posted to electrostatics solvation statistical_mechanics by sobolevnrm to the group baker-group on 2008-07-22 12:00:42 as read
  • Mastering Your Ph.D.: A Career in Management Consulting
    Science Careers (2008)
    posted to career misc by sobolevnrm to the group baker-group on 2008-07-22 11:51:37 as read
  • Very fast prediction and rationalization of p<I>K</I><SUB><FONT SIZE='-1'>a</FONT></SUB> values for protein-ligand complexes
    Proteins: Structure, Function, and Bioinformatics, Vol. 9999, No. 9999. (2008), NA.
    by Delphine C Bas, David M Rogers, Jan H Jensen
    posted to bioinformatics electrostatics pka software solvation by sobolevnrm to the group baker-group on 2008-07-22 11:48:46 as read
  • Hydrodynamic modeling of diffusion tensor properties of flexible molecules
    Journal of Computational Chemistry, Vol. 9999, No. 9999. (2008), NA.
    by Vincenzo Barone, Mirco Zerbetto, Antonino Polimeno
    posted to diffusion solvation by sobolevnrm to the group baker-group on 2008-07-22 11:43:12 as read
  • Test of the Gouy-Chapman Theory for a Charged Lipid Membrane against Explicit-Solvent Molecular Dynamics Simulations
    Physical Review Letters, Vol. 101, No. 3. (2008)
    by Myunggi Yi, Hugh Nymeyer, Huan X Zhou
    posted to biomembranes electrostatics solvation by sobolevnrm to the group baker-group on 2008-07-21 21:02:32 as read along with 2 people j_vinals agrossfield
  • Ion Specific Protein Assembly and Hydrophobic Surface Forces
    Physical Review Letters, Vol. 100, No. 25. (2008)
    by Mikael Lund, Pavel Jungwirth, Clifford E Woodward
    posted to nonpolar protein-protein_interactions solvation by sobolevnrm to the group baker-group on 2008-07-21 21:01:25 as read along with 1 person mikaellund
  • Robustly Estimating the Flow Direction of Information in Complex Physical Systems
    Physical Review Letters, Vol. 100, No. 23. (2008)
    by Guido Nolte, Andreas Ziehe, Vadim V Nikulin, Alois Schlögl, Nicole Krämer, Tom Brismar, Klaus R Müller
    posted to mathematics statistics by sobolevnrm to the group baker-group on 2008-07-21 21:00:20 as read along with 5 people josepe briordan beete hywel tjpp
  • Theory of Dielectric Relaxation in Polar Liquids
    The Journal of Chemical Physics, Vol. 52, No. 12. (1970), pp. 6353-6363.
    by Tsu W Nee, Robert Zwanzig
    posted to diffusion electrostatics solvation statistical_mechanics by sobolevnrm to the group baker-group on 2008-07-17 22:39:18 as read
  • Electric Moments of Molecules in Liquids
    Journal of the American Chemical Society, Vol. 58, No. 8. (1936), pp. 1486-1493.
    by L Onsager
    posted to electrostatics solvation statistical_mechanics by sobolevnrm to the group baker-group on 2008-07-17 18:32:11 as read
  • The Geometry Behind Numerical Solvers of the Poisson-Boltzmann Equation
    Communications in Computational Physics, Vol. 3 (2008), pp. 1032-1050.
    by X Shi, P Koehl
    posted to computational_geometry electrostatics by sobolevnrm to the group baker-group on 2008-07-16 16:22:20 as read
  • Dipolar Poisson-Boltzmann Equation: Ions and Dipoles Close to Charge Interfaces
    Physical Review Letters, Vol. 99, No. 7. (2007)
    by Ariel Abrashkin, David Andelman, Henri Orland
    posted to biomembranes electrostatics statistical_mechanics by sobolevnrm to the group baker-group on 2008-07-16 16:04:48 as read
  • Poisson-Boltzmann Theory for Membranes with Mobile Charged Lipids and the pH-Dependent Interaction of a DNA Molecule with a Membrane
    Biophys. J., Vol. 82, No. 1. (1 January 2002), pp. 76-92.
    by Christian Fleck, Roland R Netz, Hans H von Grunberg
    posted to biomembranes electrostatics nucleic_acids pka solvation by sobolevnrm to the group baker-group on 2008-07-16 16:02:21 as read along with 2 people softsimu rok
  • Morphological transitions of vesicles induced by AC electric fields
    Biophys. J. (16 May 2008), biophysj.108.132548.
    by Said Aranda, Karin A Riske, Reinhard Lipowsky, Rumiana Dimova
    posted to biomembranes electrostatics by sobolevnrm to the group baker-group on 2008-07-11 12:24:07 as read along with 1 person paulschlesinger
  • The signaling pathway of rhodopsin.
    Structure, Vol. 15, No. 5. (May 2007), pp. 611-623.
    by Y Kong, M Karplus
    posted to allostery quasiharmonic-models_elastic-network_gnm_nma_pca_etc by sobolevnrm to the group baker-group on 2008-07-11 12:18:57 as read along with 1 person dimka
  • From the Cover: A dry ligand-binding cavity in a solvated protein
    Proceedings of the National Academy of Sciences, Vol. 105, No. 17. (29 April 2008), pp. 6296-6301.
    by Johan Qvist, Monika Davidovic, Donald Hamelberg, Bertil Halle
    posted to solvation by sobolevnrm to the group baker-group on 2008-07-11 12:10:08 as read along with 2 people and 2 groups jmccammon barry structural_bioinformatics McCammon
  • Signaling pathways of PDZ2 domain: A molecular dynamics interaction correlation analysis
    Proteins, Vol. in press
    by Y Kong, M Karplus
    posted to allostery quasiharmonic-models_elastic-network_gnm_nma_pca_etc by sobolevnrm to the group baker-group on 2008-07-11 12:00:09 as read
  • Tortuosity and anomalous diffusion in the neuromuscular junction
    Physical Review E (Statistical, Nonlinear, and Soft Matter Physics), Vol. 77, No. 4. (2008)
    by Daniel J Lacks
    posted to diffusion neuromuscular_junctions by sobolevnrm to the group baker-group on 2008-07-10 12:04:33 as read
  • Annotation-Modules: A tool for finding significant combinations of multisource annotations for gene lists.
    Bioinformatics (Oxford, England) (8 May 2008)
    by Michael Hackenberg, Rune Matthiesen
    posted to bioinformatics ontology by sobolevnrm to the group baker-group on 2008-07-10 12:01:37 as read along with 2 people jyuh barriot
  • Dynameomics: a multi-dimensional analysis-optimized database for dynamic protein data
    Protein Engineering, Design and Selection, Vol. 21, No. 6. (1 June 2008), pp. 379-386.
    by Catherine Kehl, Andrew M Simms, Rudesh D Toofanny, Valerie Daggett
    posted to bioinformatics database molecular_dynamics by sobolevnrm to the group baker-group on 2008-07-10 11:58:23 as read
  • Dynameomics: design of a computational lab workflow and scientific data repository for protein simulations
    Protein Engineering, Design and Selection, Vol. 21, No. 6. (1 June 2008), pp. 369-377.
    by Andrew M Simms, Rudesh D Toofanny, Catherine Kehl, Noah C Benson, Valerie Daggett
    posted to bioinformatics database molecular_dynamics by sobolevnrm to the group baker-group on 2008-07-10 11:56:38 as read
  • Dynameomics: mass annotation of protein dynamics and unfolding in water by high-throughput atomistic molecular dynamics simulations
    Protein Engineering, Design and Selection, Vol. 21, No. 6. (1 June 2008), pp. 353-368.
    by David A Beck, Amanda L Jonsson, Dustin R Schaeffer, Kathryn A Scott, Ryan Day, Rudesh D Toofanny, Darwin O Alonso, Valerie Daggett
    posted to bioinformatics database molecular_dynamics protein_folding by sobolevnrm to the group baker-group on 2008-07-10 11:55:39 as read
  • Cell Penetrating Peptides: How Do They Do It?
    Journal of Biological Physics
    by Henry Herce, Angel Garcia
    posted to biomembranes protein-membrane_interactions by sobolevnrm to the group baker-group on 2008-07-09 11:40:07 as read
  • United-Atom Acyl Chains for CHARMM Phospholipids
    J. Phys. Chem. B, Vol. 112, No. 23. (12 June 2008), pp. 7008-7015.
    by Je&#x301;r&#xf4;me H&#xe9;nin, Wataru Shinoda, Michael L Klein
    posted to biomembranes molecular_dynamics molecular_simulation by sobolevnrm to the group baker-group on 2008-07-09 11:35:53 as read
  • Role of Backbone&#x2212;Solvent Interactions in Determining Conformational Equilibria of Intrinsically Disordered Proteins
    J. Am. Chem. Soc. (16 May 2008)
    by Hoang T Tran, Albert Mao, Rohit V Pappu
    posted to protein_folding solvation by sobolevnrm to the group baker-group on 2008-07-09 11:35:18 as read along with 1 person paulschlesinger
  • Dielectric relaxation in proteins: the computational perspective.
    Photosynthesis research (29 April 2008)
    by Thomas Simonson
    posted to electrostatics quantum_mechanics solvation by sobolevnrm to the group baker-group on 2008-07-09 11:33:04 as read along with 1 person dimka
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