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Group: EBI-regulation - with tag yeast [40 articles]

Neue Artikel von Mitliedern der Gruppe EBI-regulation Gruppe with tag yeast
  • Genetic reconstruction of a functional transcriptional regulatory network.
    Nat Genet (8 April 2007)
    by Zhanzhi Hu, Patrick J J Killion, Vishwanath R R Iyer
  • Yeast transcriptional regulatory mechanisms.
    Annu Rev Genet, Vol. 29 (1995), pp. 651-674.
    by K Struhl
    posted to yeast tf by nickluscombe to the group EBI-regulation on 2007-05-23 12:28:53 as **
  • Refinement and expansion of signaling pathways: the osmotic response network in yeast.
    Genome Res, Vol. 17, No. 3. (March 2007), pp. 358-367.
    posted to yeast transcription by nickluscombe to the group EBI-regulation on 2007-04-30 10:45:20 as ** along with 2 people dragonrez roys
  • Complex Genetic Interactions in a Quantitative Trait Locus.
    PLoS Genet, Vol. 2, No. 2. (3 February 2006)
    by Himanshu Sinha, Bradly P P Nicholson, Lars M M Steinmetz, John H H McCusker
    posted to yeast qtl by nickluscombe to the group EBI-regulation on 2007-04-22 08:32:08 as ** along with 2 people raiyar ccots
  • High-throughput synergy screening identifies microbial metabolites as combination agents for the treatment of fungal infections
    PNAS, Vol. 104, No. 11. (13 March 2007), pp. 4606-4611.
    by Lixin Zhang, Kezhi Yan, Yu Zhang, Ren Huang, Jiang Bian, Chuansen Zheng, Haixiang Sun, Zhihui Chen, Nuo Sun, Rong An, Fangui Min, Weibo Zhao, Ying Zhuo, Jianlan You, Yongjie Song, Zhenyan Yu, Zhiheng Liu, Keqian Yang, Hong Gao, Huanqin Dai, Xiaoli Zhang, Jian Wang, Chengzhang Fu, Gang Pei, Jintao Liu, Si Zhang, Michael Goodfellow, Yuanying Jiang, Jun Kuai, Guochun Zhou, Xiaoping Chen
    posted to yeast by nickluscombe to the group EBI-regulation on 2007-03-13 18:17:18 as **
  • Comparative proteomic and transcriptomic profiling of the fission yeast Schizosaccharomyces pombe
    Mol Syst Biol, Vol. 3 (13 February 2007)
    by Michael W Schmidt, Andres Houseman, Alexander R Ivanov, Dieter A Wolf
    posted to proteomics yeast by nickluscombe to the group EBI-regulation on 2007-02-26 09:54:26 as **
  • Towards a comprehensive atlas of the physical interactome of Saccharomyces cerevisiae.
    Mol Cell Proteomics (2 January 2007)
    by Sean R R Collins, Patrick Kemmeren, Xue-Chu C Zhao, Jack F F Greenblatt, Forrest Spencer, Frank C C Holstege, Jonathan S S Weissman, Nevan J J Krogan
  • Activated signal transduction kinases frequently occupy target genes.
    Science, Vol. 313, No. 5786. (28 July 2006), pp. 533-536.
    posted to kinases signalling yeast by nickluscombe to the group EBI-regulation on 2006-08-01 14:15:11 as ** along with 1 person mmcclean
  • A genetic signature of interspecies variations in gene expression
    Nature Genetics, Vol. 38, No. 7. (18 June 2006), pp. 830-834.
    by Itay Tirosh, Adina Weinberger, Miri Carmi, Naama Barkai
  • Comprehensive curation and analysis of global interaction networks in Saccharomyces cerevisiae
    Journal of Biology, Vol. 5, No. 4. (08 June 2006), 11.
    by Teresa Reguly, Ashton Breitkreutz, Lorrie Boucher, Bobby-Joe Breitkreutz, Gary C Hon, Chad L Myers, Ainslie Parsons, Helena Friesen, Rose Oughtred, Amy Tong, Chris Stark, Yuen Ho, David Botstein, Brenda Andrews, Charles Boone, Olga G Troyanskya, Trey Ideker, Kara Dolinski, Nizar N Batada, Mike Tyers
  • Noise in protein expression scales with natural protein abundance
    Nature Genetics, Vol. 38, No. 6. (21 May 2006), pp. 636-643.
    by Arren Bar-Even, Johan Paulsson, Narendra Maheshri, Miri Carmi, Erin O'Shea, Yitzhak Pilpel, Naama Barkai
    posted to yeast by nickluscombe to the group EBI-regulation on 2006-06-01 17:05:00 as ** along with 5 people nirfriedman madhadron balabu margaritis cjeans
  • Systematic determination of genetic network architecture.
    Nat Genet, Vol. 22, No. 3. (July 1999), pp. 281-285.
    by S Tavazoie, JD Hughes, MJ Campbell, RJ Cho, GM Church
  • Revealing modular organization in the yeast transcriptional network.
    Nat Genet, Vol. 31, No. 4. (August 2002), pp. 370-377.
  • Transcriptional regulatory code of a eukaryotic genome
    Nature, Vol. 431, No. 7004. (2004), pp. 99-104.
    by Christopher T Harbison, Benjamin D Gordon, Tong I Lee, Nicola J Rinaldi, Kenzie D Macisaac, Timothy W Danford, Nancy M Hannett, Jean-Bosco Tagne, David B Reynolds, Jane Yoo, Ezra G Jennings, Julia Zeitlinger, Dmitry K Pokholok, Manolis Kellis, Alex P Rolfe, Ken T Takusagawa, Eric S Lander, David K Gifford, Ernest Fraenkel, Richard A Young
  • Comparative gene expression analysis by differential clustering approach: application to the Candida albicans transcription program.
    PLoS Genet, Vol. 1, No. 3. (September 2005)
  • Conservation and Evolution of Cis-Regulatory Systems in Ascomycete Fungi.
    PLoS Biol, Vol. 2, No. 12. (9 November 2004)
    by Audrey P P Gasch, Alan M M Moses, Derek Y Y Chiang, Hunter B B Fraser, Mark Berardini, Michael B B Eisen
  • Integrated analysis of regulatory and metabolic networks reveals novel regulatory mechanisms in Saccharomyces cerevisiae.
    Genome Res, Vol. 16, No. 5. (May 2006), pp. 627-635.
    by MJ Herrgård, BS Lee, V Portnoy, BØ Palsson
  • Dissecting dispensability
    Nature Genetics, Vol. 37, No. 3., pp. 214-215.
    by Laurence D Hurst, Csaba Pál
    posted to back-up yeast by nickluscombe to the group EBI-regulation on 2006-04-19 12:18:54 as **
  • Transcription control reprogramming in genetic backup circuits
    Nature Genetics, Vol. 37, No. 3. (20 February 2005), pp. 295-299.
    by Ran Kafri, Arren Bar-Even, Yitzhak Pilpel
    posted to back-up networks yeast by nickluscombe to the group EBI-regulation on 2006-04-19 12:16:41 as ** along with 3 people rklancer aswin jpoyatos
  • Global synthetic-lethality analysis and yeast functional profiling.
    Trends Genet, Vol. 22, No. 1. (January 2006), pp. 56-63.
    by SL Ooi, X Pan, BD Peyser, P Ye, PB Meluh, DS Yuan, RA Irizarry, JS Bader, FA Spencer, JD Boeke
  • Genome-wide analyses reveal RNA polymerase II located upstream of genes poised for rapid response upon S. cerevisiae stationary phase exit.
    Mol Cell, Vol. 18, No. 2. (15 April 2005), pp. 171-183.
    posted to expression yeast by nickluscombe to the group EBI-regulation on 2006-04-13 18:18:44 as **
  • Comparison of computational methods for the identification of cell cycle-regulated genes.
    Bioinformatics, Vol. 21, No. 7. (1 April 2005), pp. 1164-1171.
  • Lethality and centrality in protein networks
    Nature, Vol. 411, No. 6833. (3 May 2001), pp. 41-42.
    by H Jeong, SP Mason, AL Barabasi, ZN Oltvai
  • Genomic analysis of essentiality within protein networks.
    Trends Genet, Vol. 20, No. 6. (June 2004), pp. 227-231.
    by H Yu, D Greenbaum, H Xin Lu, X Zhu, M Gerstein
  • Functional discovery via a compendium of expression profiles.
    Cell, Vol. 102, No. 1. (7 July 2000), pp. 109-126.
    by TR Hughes, MJ Marton, AR Jones, CJ Roberts, R Stoughton, CD Armour, HA Bennett, E Coffey, H Dai, YD He, MJ Kidd, AM King, MR Meyer, D Slade, PY Lum, SB Stepaniants, DD Shoemaker, D Gachotte, K Chakraburtty, J Simon, M Bard, SH Friend
  • Integration of chemical-genetic and genetic interaction data links bioactive compounds to cellular target pathways.
    Nat Biotechnol, Vol. 22, No. 1. (January 2004), pp. 62-69.
    by AB Parsons, RL Brost, H Ding, Z Li, C Zhang, B Sheikh, GW Brown, PM Kane, TR Hughes, C Boone
    posted to yeast by nickluscombe to the group EBI-regulation on 2006-04-12 09:30:24 as ** along with 2 people koller marck
  • Genetics. Robust interactions.
    Science, Vol. 303, No. 5659. (6 February 2004), pp. 774-775.
    posted to synthetic-lethal yeast by nickluscombe to the group EBI-regulation on 2006-04-12 09:27:15 as **
  • Global Mapping of the Yeast Genetic Interaction Network
    Science, Vol. 303, No. 5659. (06 February 2004), pp. 808-813.
    by Amy HY Tong, Guillaume Lesage, Gary D Bader, Huiming Ding, Hong Xu, Xiaofeng Xin, James Young, Gabriel F Berriz, Renee L Brost, Michael Chang, Yiqun Chen, Xin Cheng, Gordon Chua, Helena Friesen, Debra S Goldberg, Jennifer Haynes, Christine Humphries, Grace He, Shamiza Hussein, Lizhu Ke, Nevan Krogan, Zhijian Li, Joshua N Levinson, Hong Lu, Patrice Menard, Christella Munyana, Ainslie B Parsons, Owen Ryan, Raffi Tonikian, Tania Roberts, Anne-Marie Sdicu, Jesse Shapiro, Bilal Sheikh, Bernhard Suter, Sharyl L Wong, Lan V Zhang, Hongwei Zhu, Christopher G Burd, Sean Munro, Chris Sander, Jasper Rine, Jack Greenblatt, Matthias Peter, Anthony Bretscher, Graham Bell, Frederick P Roth, Grant W Brown, Brenda Andrews, Howard Bussey, Charles Boone
  • Exploration of essential gene functions via titratable promoter alleles.
    Cell, Vol. 118, No. 1. (9 July 2004), pp. 31-44.
    by S Mnaimneh, AP Davierwala, J Haynes, J Moffat, WT Peng, W Zhang, X Yang, J Pootoolal, G Chua, A Lopez, M Trochesset, D Morse, NJ Krogan, SL Hiley, Z Li, Q Morris, J Grigull, N Mitsakakis, CJ Roberts, JF Greenblatt, C Boone, CA Kaiser, BJ Andrews, TR Hughes
  • The synthetic genetic interaction spectrum of essential genes
    Nat Genet, Vol. 37, No. 10. (October 2005), pp. 1147-1152.
    by Armaity P Davierwala, Jennifer Haynes, Zhijian Li, Renee L Brost, Mark D Robinson, Lisa Yu, Sanie Mnaimneh, Huiming Ding, Hongwei Zhu, Yiqun Chen, Xin Cheng, Grant W Brown, Charles Boone, Brenda J Andrews, Timothy R Hughes
  • Mapping pathways and phenotypes by systematic gene overexpression.
    Mol Cell, Vol. 21, No. 3. (3 February 2006), pp. 319-330.
    by R Sopko, D Huang, N Preston, G Chua, B Papp, K Kafadar, M Snyder, SG Oliver, M Cyert, TR Hughes, C Boone, B Andrews
    posted to expression phenotype yeast by nickluscombe to the group EBI-regulation on 2006-04-12 09:20:51 as ** along with 2 people nirfriedman koller
  • Systematic interpretation of genetic interactions using protein networks
    Nature Biotechnology, Vol. 23, No. 5. (05 May 2005), pp. 561-566.
    by Ryan Kelley, Trey Ideker
  • Target hub proteins serve as master regulators of development in yeast.
    Genes Dev, Vol. 20, No. 4. (15 February 2006), pp. 435-448.
  • The relations between dynamics and function studied in yeast cells and bacterial colonies
    (February 2003)
    by Sune Dano
    posted to bacteria modelling proteus yeast by nickluscombe to the group EBI-regulation on 2006-04-11 10:09:20 as **
  • Sustained oscillations in living cells.
    Nature, Vol. 402, No. 6759. (18 November 1999), pp. 320-322.
    by S Danø, PG Sørensen, F Hynne
    posted to modelling yeast by nickluscombe to the group EBI-regulation on 2006-04-10 15:12:41 as **
  • The cell cycle-regulated genes of Schizosaccharomyces pombe.
    PLoS Biol, Vol. 3, No. 7. (July 2005)
    posted to expression regulation transcription yeast by nickluscombe to the group EBI-regulation on 2006-04-06 12:52:27 as **
  • Genome-wide oscillation of transcription in yeast.
    Trends Biochem Sci (22 February 2006)
    by Hans Reinke, David Gatfield
    posted to regulation transcription yeast by nickluscombe to the group EBI-regulation on 2006-04-06 12:52:02 as ** along with 2 people entropy Darko
  • Global analysis of protein phosphorylation in yeast
    Nature, Vol. 438, No. 7068., pp. 679-684.
    by Jason Ptacek, Geeta Devgan, Gregory Michaud, Heng Zhu, Xiaowei Zhu, Joseph Fasolo, Hong Guo, Ghil Jona, Ashton Breitkreutz, Richelle Sopko, Rhonda R Mccartney, Martin C Schmidt, Najma Rachidi, Soo-Jung Lee, Angie S Mah, Lihao Meng, Michael JR Stark, David F Stern, Claudio De Virgilio, Mike Tyers, Brenda Andrews, Mark Gerstein, Barry Schweitzer, Paul F Predki, Michael Snyder
  • Genomic analysis of gene expression relationships in transcriptional regulatory networks.
    Trends Genet, Vol. 19, No. 8. (August 2003), pp. 422-427.
    by H Yu, NM Luscombe, J Qian, M Gerstein
    posted to regulation transcription yeast by nickluscombe to the group EBI-regulation on 2006-04-02 20:13:08 as read along with 1 person karfunkel
  • Global landscape of protein complexes in the yeast Saccharomyces cerevisiae
    Nature (22 March 2006)
    by Nevan J Krogan, Gerard Cagney, Haiyuan Yu, Gouqing Zhong, Xinghua Guo, Alexandr Ignatchenko, Joyce Li, Shuye Pu, Nira Datta, Aaron P Tikuisis, Thanuja Punna, Josã© M Peregrã­n-Alvarez, Michael Shales, Xin Zhang, Michael Davey, Mark D Robinson, Alberto Paccanaro, James E Bray, Anthony Sheung, Bryan Beattie, Dawn P Richards, Veronica Canadien, Atanas Lalev, Frank Mena, Peter Wong, Andrei Starostine, Myra M Canete, James Vlasblom, Samuel Wu, Chris Orsi, Sean R Collins, Shamanta Chandran, Robin Haw, Jennifer J Rilstone, Kiran Gandi, Natalie J Thompson, Gabe Musso, Peter St Onge, Shaun Ghanny, Mandy HY Lam, Gareth Butland, Amin M Altaf-Ul, Shigehiko Kanaya, Ali Shilatifard, Erin O'Shea, Jonathan S Weissman, James C Ingles, Timothy R Hughes, John Parkinson, Mark Gerstein, Shoshana J Wodak, Andrew Emili, Jack F Greenblatt
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