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Autor Zacharias [35 articles]

Neu eingetragene Papers vom Autor: Zacharias.
  • Protein−Ligand Docking Accounting for Receptor Side Chain and Global Flexibility in Normal Modes: Evaluation on Kinase Inhibitor Cross Docking
    J. Med. Chem., Vol. 51, No. 12. (26 June 2008), pp. 3499-3506.
    by Andreas May, Martin Zacharias
    posted to enm_application_docking by aqeel on 2008-07-25 09:16:38 as ** along with 1 person higueruelo
  • Dissecting protein-RNA recognition sites
    Nucl. Acids Res., Vol. 36, No. 8. (1 May 2008), pp. 2705-2716.
    by Ranjit P Bahadur, Martin Zacharias, Joel Janin
    posted to rna-protein-interactions by marck on 2008-06-03 06:46:03 as **
  • Comparative study of photoluminescence of undoped and erbium-doped size-controlled nanocrystalline Si/SiO[sub 2] multilayered structures
    Journal of Applied Physics, Vol. 96, No. 4. (2004), pp. 2254-2260.
    by Yu, MG Lisachenko, OA Shalygina, BV Kamenev, DM Zhigunov, SA Teterukov, PK Kashkarov, J Heitmann, M Schmidt, M Zacharias
    posted to jap by rice on 2008-05-06 09:56:11 as **
  • Semiconductor Nanowires: From Self-Organization to Patterned Growth
    Small, Vol. 2, No. 6. (2006), pp. 700-717.
    by Hong J Fan, Peter Werner, Margit Zacharias
    posted to ece559 nanowire by Quarem on 2008-04-18 03:38:35 as **
  • Neurotensin increases mortality and mast cells reduce neurotensin levels in a mouse model of sepsis
    Nature Medicine, Vol. 14, No. 4. (30 March 2008), pp. 392-398.
    by Adrian M Piliponsky, Ching-Cheng Chen, Toshihiko Nishimura, Martin Metz, Eon J Rios, Paul R Dobner, Etsuko Wada, Keiji Wada, Sherma Zacharias, Uma M Mohanasundaram, James D Faix, Magnus Abrink, Gunnar Pejler, Ronald G Pearl, Mindy Tsai, Stephen J Galli
    posted to mast sepsis by nickpitman on 2008-04-07 16:00:27 as **
  • notes Combining Elastic Network Analysis and Molecular Dynamics Simulations by Hamiltonian Replica Exchange
    J. Chem. Theory Comput., Vol. 4, No. 3. (11 March 2008), pp. 477-487.
    by M Zacharias
    posted to coarse-grained domain_motions md_simulation nma by barry on 2008-03-20 01:18:55 as ** along with 1 person and 1 group sobolevnrm baker-group
  • The interface of protein-protein complexes: Analysis of contacts and prediction of interactions.
    Cell Mol Life Sci (15 December 2007)
    by R P Bahadur, M Zacharias
    posted to interactions interfaces prediction by marti on 2008-01-24 12:07:35 as read along with 1 person higueruelo
  • SOBOLEO: vom kollaborativen Tagging zur leichtgewichtigen Ontologie
    (2007), pp. 209-218.
    by Simone Braun, Andreas Schmidt, Valentin Zacharias
    edited by Tom Gross, Tom Gross
    posted to ontology_maturing soboleo by a-p-s on 2008-01-12 19:58:51 as read
  • Continuum Solvent Modeling of Nonpolar Solvation: Improvement by Separating Surface Area Dependent Cavity and Dispersion Contributions
    J. Phys. Chem. A, Vol. 107, No. 16. (24 April 2003), pp. 3000-3004.
    by M Zacharias
    posted to nonpolar solvation by sobolevnrm to the group baker-group on 2008-01-11 12:52:09 as read along with 1 person dmobley
  • Protein-protein docking in CAPRI using ATTRACT to account for global and local flexibility
    Proteins: Structure, Function, and Bioinformatics, Vol. 69, No. 4. (2007), pp. 774-780.
    by Andreas May, Martin Zacharias
    posted to enm_application_docking by aqeel on 2008-01-09 12:03:06 as **
  • Deconvoluting the intestine: molecular evidence for a major role of the mesenchyme in the modulation of signaling cross talk.
    Physiol Genomics, Vol. 29, No. 3. (11 May 2007), pp. 290-301.
    by X Li, BB Madison, W Zacharias, A Kolterud, D States, DL Gumucio
    posted to hnf4 intestine targets by yevishere on 2008-01-03 23:26:06 as **
  • Rapid protein-ligand docking using soft modes from molecular dynamics simulations to account for protein deformability: binding of FK506 to FKBP.
    Proteins, Vol. 54, No. 4. (1 March 2004), pp. 759-767.
    by M Zacharias
    posted to docking md by RamuAnandakrishnan on 2007-11-27 22:33:55 as ** along with 2 people dgruiz ttjoseph
  • Clustering Ontology-Based Metadata in the Semantic Web
    Lecture Notes in Computer Science : Principles of Data Mining and Knowledge Discovery: 6th European Conference, PKDD 2002, Helsinki, Finland, August 19-23, 2002. Proceedings, Vol. 2431 (2002), pp. 383-408.
    by Alexander Maedche, Valentin Zacharias
    posted to no-tag by flashfonic on 2007-11-07 14:38:06 as read along with 1 person and 1 group RiccardoAlbertoni ImatiGESemantic
  • Cation-pi interactions in ligand recognition and catalysis.
    Trends Pharmacol Sci, Vol. 23, No. 6. (June 2002), pp. 281-287.
    by N Zacharias, DA Dougherty
    posted to binding cation-pi interaction substrate by netterpaladin on 2007-10-25 09:20:39 as **
  • Energy minimization in low-frequency normal modes to efficiently allow for global flexibility during systematic protein-protein docking
    Proteins: Structure, Function, and Bioinformatics, Vol. 9999, No. 9999. (2007), NA.
    by Andreas May, Martin Zacharias
    posted to protein-protein_interactions quasiharmonic-models_elastic-network_gnm_nma_pca_etc by sobolevnrm on 2007-08-30 12:42:59 as read along with 1 group baker-group
  • Folding of a DNA hairpin loop structure in explicit solvent using replica-exchange molecular dynamics simulations.
    Biophys J (27 July 2007)
    by Srinivasaraghavan Kannan, Martin Zacharias
    posted to conformations dna remd by char on 2007-08-07 06:21:38 as ***
  • RNA kink-turns as molecular elbows: hydration, cation binding, and large-scale dynamics.
    Structure, Vol. 14, No. 5. (May 2006), pp. 825-835.
    by F Rázga, M Zacharias, K Réblová, J Koca, J Sponer
    posted to rna structure by jarasch on 2007-07-04 09:31:04 as **
  • Minor Groove Deformability of DNA: A Molecular Dynamics Free Energy Simulation Study
    Biophys. J., Vol. 91, No. 3. (1 August 2006), pp. 882-891.
    by Martin Zacharias
    posted to no-tag by phisics on 2007-04-19 03:54:22 as **
  • Protein-protein docking with a reduced protein model accounting for side-chain flexibility.
    Protein Sci, Vol. 12, No. 6. (June 2003), pp. 1271-1282.
    by M Zacharias
    posted to coarse-grained protein-interaction by choonpeng on 2007-03-12 08:09:50 as *** along with 2 people blackbart bluvsh1
  • Old habits die hard: chest radiography for screening purposes in primary care.
    Am J Manag Care, Vol. 12, No. 11. (November 2006), pp. 650-656.
    by D Mauri, K Kamposioras, A Proiskos, A Xilomenos, C Peponi, M Dambrosio, G Zacharias, G Koukourakis, G Pentheroudakis, N Pavlidis
    posted to cwpbok by siro on 2007-03-05 03:16:38 as **
  • A molecular mechanics/grid method for evaluation of ligand-receptor interactions
    Journal of Computational Chemistry, Vol. 16, No. 4. (1995), pp. 454-464.
    by Brock A Luty, Zelda R Wasserman, Pieter FW Stouten, Nicholas C Hodge, Martin Zacharias, Andrew J Mccammon
    posted to md simulation by sangeetha on 2006-12-29 07:05:59 as **** along with 1 person and 2 groups papatonyhill Bioinformatics insilicodrug
  • Calciphylaxis is usually non-ulcerating: risk factors, outcome and therapy.
    Kidney Int, Vol. 61, No. 6. (June 2002), pp. 2210-2217.
    by A Fine, J Zacharias
    posted to calciphylaxis by brainsman2000 on 2006-12-03 00:05:39 as **
  • [Laparoscopic vs. open nephrectomy. 10 years' results of a nonrandomized comparative study of 549 patients with benign kidney diseases]
    Urologe A, Vol. 42, No. 2. (February 2003), pp. 197-204.
    by P Fornara, M Zacharias, M Steinacker, C Doehn, D Jocham
    posted to laparoscopy by zkyken on 2006-11-20 14:55:26 as ****
  • Harmonic modes as variables to approximately account for receptor flexibility in ligand-receptor docking simulations: Application to DNA minor groove ligand complex
    Journal of Computational Chemistry, Vol. 20, No. 3. (1999), pp. 287-300.
    by Martin Zacharias, Heinz Sklenar
    posted to docking flexibility by kazemi on 2006-11-09 15:30:37 as **
  • A Hierarchical Ecological Approach to Conserving Marine Biodiversity
    Conservation Biology, Vol. 14, No. 5. (2000), pp. 1327-1334.
    by Mark A Zacharias, John C Roff
    posted to conservation marine by temde on 2006-10-24 13:48:43 as ****
  • Sensitivity and Vulnerability in Marine Environments: an Approach to Identifying Vulnerable Marine Areas
    Conservation Biology, Vol. 19, No. 1. (February 2005), 86.
    by Mark ACHARIAS Zacharias, Edward REGR Gregr
    posted to conservation marine by temde on 2006-10-24 11:54:44 as ****
  • Accounting for loop flexibility during protein-protein docking.
    Proteins (21 December 2005)
    by Karine Bastard, Chantal Prévost, Martin Zacharias
    posted to flex-docking_large-change_loop by aqeel on 2006-10-12 10:23:46 as ** along with 1 person and 1 group yongzhao TSRI_MGL
  • Accounting for global protein deformability during protein-protein and protein-ligand docking.
    Biochim Biophys Acta (5 October 2005)
    by Andreas May, Martin Zacharias
    posted to net_paper by alexg on 2006-08-18 02:18:19 as ** along with 2 people and 1 group yongzhao qzhang TSRI_MGL
  • Comparison of molecular dynamics and harmonic mode calculations on RNA
    Biopolymers, Vol. 54, No. 7. (2000), pp. 547-560.
    by Martin Zacharias
    posted to md_of_rna by simone on 2006-08-01 17:10:20 as **
  • Measurement of molecular interactions in living cells by fluorescence resonance energy transfer between variants of the green fluorescent protein.
    Sci STKE, Vol. 2000, No. 38. (27 June 2000)
    by RM Siegel, FK Chan, DA Zacharias, R Swofford, KL Holmes, RY Tsien, MJ Lenardo
    posted to cytometry fret by Fritz on 2006-06-30 12:52:22 as ** along with 1 group neurolit
  • ATTRACT: protein-protein docking in CAPRI using a reduced protein model.
    Proteins, Vol. 60, No. 2. (1 August 2005), pp. 252-256.
    by M Zacharias
    posted to capri docking-algorithm by bicko on 2006-06-23 01:41:50 as **
  • Genome sizes in afrotheria, xenarthra, euarchontoglires, and laurasiatheria.
    J Hered, Vol. 96, No. 5. (t 2005), pp. 485-493.
    by CA Redi, H Zacharias, S Merani, M Oliveira-Miranda, M Aguilera, M Zuccotti, S Garagna, E Capanna
    posted to bat genome_size whole_genome by aprasad on 2006-03-28 16:45:05 as **
  • Outdoor human comfort in an urban climate
    Building and Environment, Vol. 39, No. 3. (March 2004), pp. 297-305.
    by T Stathopoulos, H Wu, J Zacharias
    posted to comfort by KaisaS on 2006-02-16 15:54:05 as **
  • The bend in RNA created by the trans-activation response element bulge of human immunodeficiency virus is straightened by arginine and by Tat-derived peptide.
    Proc Natl Acad Sci U S A, Vol. 92, No. 13. (20 June 1995), pp. 6052-6056.
    by M Zacharias, PJ Hagerman
    posted to ions tar tar-arginine by lillekatt on 2005-12-13 12:24:31 as **
  • Partitioning of lipid-modified monomeric GFPs into membrane microdomains of live cells.
    Science, Vol. 296, No. 5569. (3 May 2002), pp. 913-916.
    by DA Zacharias, JD Violin, AC Newton, RY Tsien
    posted to fret lmg zacharias by Catherine on 2005-01-14 03:05:54 as **
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