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Autor Vriend [30 articles]

Neu eingetragene Papers vom Autor: Vriend.
  • Tracing evolutionary pressure
    Bioinformatics, Vol. 24, No. 7. (1 April 2008), pp. 908-915.
    by Kai Ye, Gert Vriend, Adriaan P Ijzerman
    posted to domain-example by gulkur on 2008-08-13 19:28:55 as ** along with 2 people and 2 groups barry sunhwan structural_bioinformatics Bioinformatics
  • Optimizing the hydrogen-bond network in Poisson-Boltzmann equation-based pK(a) calculations.
    Proteins, Vol. 43, No. 4. (1 June 2001), pp. 403-412.
    by JE Nielsen, G Vriend
    posted to pka by RamuAnandakrishnan on 2008-07-10 02:35:10 as **
  • Positioning hydrogen atoms by optimizing hydrogen-bond networks in protein structures.
    Proteins, Vol. 26, No. 4. (December 1996), pp. 363-376.
    by RW Hooft, C Sander, G Vriend
    posted to structure scp by carlk on 2008-06-26 18:21:59 as **** along with 1 person lna
  • New POU dimer configuration mediates antagonistic control of an osteopontin preimplantation enhancer by Oct-4 and Sox-2.
    Genes & development, Vol. 12, No. 13. (1 July 1998), pp. 2073-2090.
    by V Botquin, H Hess, G Fuhrmann, C Anastassiadis, MK Gross, G Vriend, HR Schöler
    posted to oct-4 by MllePapillon on 2008-06-24 11:44:59 as **
  • A database of protein structure families with common folding motifs.
    Protein science : a publication of the Protein Society, Vol. 1, No. 12. (December 1992), pp. 1691-1698.
    by L Holm, C Ouzounis, C Sander, G Tuparev, G Vriend
    posted to sander holm domain by ca3295 on 2008-05-27 11:37:19 as **
  • Definition of a New Information-Based Per-Residue Quality Parameter
    Journal of Biomolecular NMR, Vol. 33, No. 2. (October 2005), pp. 123-134.
    by Sander Nabuurs, Elmar Krieger, Chris Spronk, Aart Nederveen, Gert Vriend, Geerten Vuister
    posted to nmr information content by apaydin on 2008-05-10 23:07:51 as **
  • PDB improvement starts with data deposition [3]
    Science, Vol. 317, No. 5835. (2007), pp. 195-196.
    by RP Joosten, G Vriend
    posted to no-tag by skoddet on 2008-04-09 10:39:09 as read
  • Traditional Biomolecular Structure Determination by NMR Spectroscopy Allows for Major Errors.
    PLoS Comput Biol, Vol. 2, No. 2. (3 February 2006)
    by Sander B B Nabuurs, Chris A E M A Spronk, Geerten W W Vuister, Gert Vriend
    posted to structure-validation by choonpeng on 2008-01-24 07:29:07 as read along with 1 person dgront
  • Prediction of protein conformational freedom from distance constraints
    Proteins: Structure, Function, and Genetics, Vol. 29, No. 2. (7 December 1998), pp. 240-251.
    by BL de Groot, DMF van Aalten, RM Scheek, A Amadei, G Vriend, HJC Berendsen
    posted to algorithms conformation by rabio on 2008-01-19 11:15:50 as ** along with 5 people and 2 groups aqeel yhu dgront superpyrin mijam TSRI_MGL Conformational_disease
  • GPCRDB: an information system for G protein-coupled receptors
    Nucl. Acids Res., Vol. 26, No. 1. (1 January 1998), pp. 275-279.
    by F Horn, J Weare, Mw Beukers, S Horsch, A Bairoch, W Chen, O Edvardsen, F Campagne, G Vriend
    posted to database by cjeans on 2007-12-01 08:20:07 as ** along with 1 person nigham
  • Correlated Mutation Analyses on Very Large Sequence Families
    ChemBioChem, Vol. 3, No. 10. (2002), pp. 1010-1017.
    by L Oliveira, ACM Paiva, G Vriend
    posted to correlated-mutation by cjeans on 2007-12-01 08:15:49 as ** along with 1 person BioNica
  • GeneSeeker: extraction and integration of human disease-related information from web-based genetic databases.
    Nucleic Acids Res, Vol. 33, No. Web Server issue. (1 July 2005)
    by MA van Driel, K Cuelenaere, PP Kemmeren, JA Leunissen, HG Brunner, G Vriend
    posted to no-tag by jyuh on 2007-11-18 08:08:00 as **
  • A text-mining analysis of the human phenome
    European Journal of Human Genetics, Vol. aop, No. current.
    by Marc A van Driel, Jorn Bruggeman, Gert Vriend, Han G Brunner, Jack AM Leunissen,
    posted to snp phenotype by jyuh on 2007-11-18 07:58:09 as ** along with 2 people and 3 groups yas dejori T_lab ic4 generif_paper
  • Prediction of protein conformational freedom from distance constraints.
    Proteins, Vol. 29, No. 2. (October 1997), pp. 240-251.
    by BL de Groot, DM van Aalten, RM Scheek, A Amadei, G Vriend, HJ Berendsen
    posted to first by simone on 2007-10-31 10:18:32 as **
  • Completion and refinement of 3-D homology models with restricted molecular dynamics: application to targets 47, 58, and 111 in the CASP modeling competition and posterior analysis.
    Proteins, Vol. 48, No. 4. (1 September 2002), pp. 593-604.
    by JA Flohil, G Vriend, HJ Berendsen
    posted to laccase no-tag by ffranca on 2007-09-26 15:57:01 as **
  • Requirements and ontology for a G protein-coupled receptor oligomerization knowledge base
    BMC Bioinformatics, Vol. 8 (30 May 2007), 177.
    by Lucy Skrabanek, Marta Murcia, Michel Bouvier, Lakshmi Devi, Susan R George, Martin J Lohse, Graeme Milligan, Richard Neubig, Krzysztof Palczewski, Marc Parmentier, Jean-Philippe Pin, Gerrit Vriend, Jonathan A Javitch, Fabien Campagne, Marta Filizola
    posted to dimer gpcr review by xdeupi on 2007-06-02 19:25:57 as ** along with 1 group LabCompMed
  • The PDBFINDER database: a summary of PDB, DSSP and HSSP information with added value.
    Comput Appl Biosci, Vol. 12, No. 6. (December 1996), pp. 525-529.
    by RW Hooft, C Sander, M Scharf, G Vriend
    posted to no-tag by leelarcombe on 2007-04-17 16:31:29 as read
  • Calibration of modelled mixing patterns in loess grain-size distributions: an example from the north-eastern margin of the Tibetan Plateau, China
    Sedimentology, Vol. 52, No. 6. (December 2005), pp. 1361-1374.
    by Mirjam Vriend, Maarten A Prins
    posted to thesis by bryanl on 2007-04-17 15:51:32 as **
  • Applications of dynamic nuclear polarization in 13C NMR in solids
    Progress in Nuclear Magnetic Resonance Spectroscopy, Vol. 17 (1985), pp. 33-67.
    by RA Wind, MJ Duijvestijn, C van der Lugt, A Manenschijn, J Vriend
    posted to dnp review by ewmoore on 2007-03-26 16:22:18 as **
  • Models@Home: distributed computing in bioinformatics using a screensaver based approach
    Bioinformatics, Vol. 18, No. 2. (1 February 2002), pp. 315-318.
    by Elmar Krieger, Gert Vriend
    posted to bioinformatics pads simulation by roland_ewald on 2007-03-23 13:11:47 as read along with 2 groups dIEMoSIRIS MoSi-Rostock
  • notes Correcting ligands, metabolites, and pathways
    BMC Bioinformatics, Vol. 7 (28 November 2006), 517.
    by Martin A Ott, Gert Vriend
    posted to error database chemical by kuhn on 2007-02-07 20:21:58 as read along with 2 people BragilMassoud aswin
  • Improving macromolecular electrostatics calculations.
    Protein Eng, Vol. 12, No. 8. (August 1999), pp. 657-662.
    by JE Nielsen, KV Andersen, B Honig, RW Hooft, G Klebe, G Vriend, RC Wade
    posted to hydrogen_bonding_networks electrostatics by cat_worth on 2007-02-07 12:16:42 as ** along with 1 group structural_bioinformatics
  • Conformational changes in the chaperonin GroEL: new insights into the allosteric mechanism.
    J Mol Biol, Vol. 286, No. 4. (5 March 1999), pp. 1241-1249.
    by BL de Groot, G Vriend, HJ Berendsen
    posted to dynamics_ensembles_concoord by aqeel on 2006-11-02 19:39:51 as **
  • WHAT IF: a molecular modeling and drug design program.
    J Mol Graph, Vol. 8, No. 1. (March 1990)
    by G Vriend
    posted to gh1 whatif by papatonyhill on 2006-10-20 00:49:15 as **
  • Errors in protein structures.
    Nature, Vol. 381, No. 6580. (23 May 1996)
    by RW Hooft, G Vriend, C Sander, EE Abola
    posted to mqap by dgront on 2006-05-25 14:16:54 as *
  • PRODRG, a program for generating molecular topologies and unique molecular descriptors from coordinates of small molecules.
    J Comput Aided Mol Des, Vol. 10, No. 3. (June 1996), pp. 255-262.
    by DM van Aalten, R Bywater, JB Findlay, M Hendlich, RW Hooft, G Vriend
    posted to descriptors by sangeetha on 2006-05-01 11:32:16 as ** along with 1 person and 2 groups dgruiz Bioinformatics insilicodrug
  • The essential dynamics of thermolysin: confirmation of the hinge-bending motion and comparison of simulations in vacuum and water.
    Proteins, Vol. 22, No. 1. (May 1995), pp. 45-54.
    by DM van Aalten, A Amadei, AB Linssen, VG Eijsink, G Vriend, HJ Berendsen
    posted to md_simulation pca protein_dynamics protein_structure by barry on 2006-03-17 20:07:25 as read along with 2 groups structural_bioinformatics Bioinformatics
  • Identification of functionally conserved residues with the use of entropy-variability plots.
    Proteins, Vol. 52, No. 4. (1 September 2003), pp. 544-552.
    by L Oliveira, PB Paiva, AC Paiva, G Vriend
    posted to bioinformatics protein_design protein_sequence sequence_comparison by barry on 2005-08-01 22:41:32 as ** along with 2 groups structural_bioinformatics Bioinformatics
  • DRESS: a database of REfined solution NMR structures.
    Proteins, Vol. 55, No. 3. (15 May 2004), pp. 483-486.
    by SB Nabuurs, AJ Nederveen, W Vranken, JF Doreleijers, AM Bonvin, GW Vuister, G Vriend, CA Spronk
    posted to nmr protein_structure by karbak on 2005-03-15 03:34:55 as ****
  • Rational engineering of enzyme stability.
    J Biotechnol, Vol. 113, No. 1-3. (30 September 2004), pp. 105-120.
    by VG Eijsink, A Bjørk, S Gåseidnes, R Sirevåg, B Synstad, B van den Burg, G Vriend
    posted to enzyme folding protein proteolysis stability by steinia on 2005-03-12 15:54:20 as **** along with 1 person sgaseid
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