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Autor Speed [46 articles]

Neu eingetragene Papers vom Autor: Speed.
  • Transcription Factors Bind Thousands of Active and Inactive Regions in the Drosophila Blastoderm
    PLoS Biology, Vol. 6, No. 2. (1 February 2008), e27.
    by Xiao-Yong Li, Stewart Macarthur, Richard Bourgon, David Nix, Daniel A Pollard, Venky N Iyer, Aaron Hechmer, Lisa Simirenko, Mark Stapleton, Cris L Hendriks, Hou C Chu, Nobuo Ogawa, William Inwood, Victor Sementchenko, Amy Beaton, Richard Weiszmann, Susan E Celniker, David W Knowles, Tom Gingeras, Terence P Speed, Michael B Eisen, Mark D Biggin
    posted to no-tag by isimpson on 2008-07-21 12:16:28 as ***** along with 5 people brant kengg maximilianh caseybrown emptyhb
  • notes Markov Fields and Log-Linear Interaction Models for Contingency Tables
    The Annals of Statistics, Vol. 8, No. 3. (1980), pp. 522-539.
    by JN Darroch, SL Lauritzen, TP Speed
    posted to mrfs by lfriedl on 2008-07-18 21:58:10 as **
  • Exploration, normalization, and summaries of high density oligonucleotide array probe level data.
    Biostatistics, Vol. 4, No. 2. (April 2003), pp. 249-264.
    by RA Irizarry, B Hobbs, F Collin, YD Beazer-Barclay, KJ Antonellis, U Scherf, TP Speed
    posted to normalisation gene-expression by vertikalist on 2008-07-14 09:58:24 as ** along with 15 people and 4 groups miguel textoris Dax42 RMGraze fisherp tvdbulck dtc1 vpschulz rmk joepickrell ghattem bertelsen jo_davies waszak bakakaj MathBio Bioinformatics Computational_Systems_Biology Systems_Biology
  • A comparison of normalization methods for high density oligonucleotide array data based on variance and bias.
    Bioinformatics, Vol. 19, No. 2. (22 January 2003), pp. 185-193.
    by BM Bolstad, RA Irizarry, M Astrand, TP Speed
    posted to normalisation gene-expression by vertikalist on 2008-07-14 09:42:39 as ** along with 11 people gjuggler bertelsen cassj Dax42 pcahan1 chad_davis RMGraze filmsternchen qmwwallace joepickrell ghattem
  • GOstat: find statistically overrepresented Gene Ontologies within a group of genes.
    Bioinformatics, Vol. 20, No. 9. (12 June 2004), pp. 1464-1465.
    by T Beissbarth, TP Speed
    posted to probmod function enrichment by ellakat on 2008-06-18 22:19:55 as ** along with 6 people and 1 group Yanno miguel RMGraze indigoviolet jdiggans yevishere EisenLab
  • A comparison of Affymetrix gene expression arrays
    BMC Bioinformatics, Vol. 8, No. 1. (2007)
    by Mark Robinson, Terence Speed
    posted to exon_arrays affy by jfr on 2008-06-17 16:52:18 as read along with 2 people hpaces waszak
  • notes Rooting a phylogenetic tree with nonreversible substitution models.
    BMC evolutionary biology, Vol. 5, No. 1. (4 January 2005)
    by VB Yap, T Speed
    posted to phylogeny molec_evo by timflutre on 2008-06-12 17:26:22 as read
  • Evolving gene/transcript definitions significantly alter the interpretation of GeneChip data
    Nucleic Acids Research, Vol. 33, No. 20. (2005), pp. e175-e175.
    by Manhong Dai, Pinglang Wang, Andrew D Boyd, Georgi Kostov, Brian Athey, Edward G Jones, William E Bunney, Richard M Myers, Terry P Speed, Huda Akil, Stanley J Watson, Fan Meng
    posted to microarray affy by shikin to the group GeneGo on 2008-06-02 15:09:44 as ** along with 7 people and 1 group bertelsen pcahan1 frohike incovoma nicholso heliopais Montrachet Bioinformatics
  • An HMM model for coiled-coil domains and a comparison with PSSM-based predictions.
    Bioinformatics, Vol. 18, No. 4. (April 2002), pp. 617-625.
    by M Delorenzi, T Speed
    posted to prediction hmm coiled-coil by ca3295 on 2008-05-27 14:41:30 as ** along with 3 people hansen cjeans gwenknight
  • Summaries of Affymetrix GeneChip probe level data.
    Nucleic Acids Res, Vol. 31, No. 4. (15 February 2003)
    by RA Irizarry, BM Bolstad, F Collin, LM Cope, B Hobbs, TP Speed
    posted to microarray data_normalization by srp33 on 2008-05-12 21:32:08 as ** along with 11 people bertelsen pcahan1 RMGraze aviad_work vplagnol ghattem talponer heliopais wirawan waszak rschulz
  • `The Times They are A-Changin': Gender Comparisons in Three National Newspapers of the 2004 Wimbledon Championships
    International Review for the Sociology of Sport, Vol. 42, No. 1. (1 March 2007), pp. 27-41.
    by Jane Crossman, John Vincent, Harriet Speed
    posted to no-tag by thanasis on 2008-05-08 23:53:44 as **
  • Estimation and assessment of raw copy numbers at the single locus level
    Bioinformatics, Vol. 24, No. 6. (15 March 2008), pp. 759-767.
    by H Bengtsson, R Irizarry, B Carvalho, TP Speed
    posted to bioinf by Ema on 2008-05-04 12:20:50 as ** along with 1 person djkt
  • Colon cancer prognosis prediction by gene expression profiling
    Oncogene, Vol. aop, No. current.
    by Alain Barrier, Antoinette Lemoine, Pierre-Yves Boelle, Chantal Tse, Didier Brault, Franck Chiappini, Julia Breittschneider, François Lacaine, Sidney Houry, Michel Huguier, Mark J Van der Laan, Terry Speed, Brigitte Debuire, Antoine Flahault, Sandrine Dudoit,
    posted to classification colon_cancer stageii by jfr on 2008-02-11 11:52:09 as read along with 1 person cpnP
  • Expression profiling in primates reveals a rapid evolution of human transcription factors
    Nature, Vol. 440, No. 7081. (March 2006), pp. 242-245.
    by Yoav Gilad, Alicia Oshlack, Gordon K Smyth, Terence P Speed, Kevin P White
    posted to expression by emptyhb on 2008-01-22 15:55:19 as ** along with 15 people and 4 groups stevanspringer ccots eckart_bindewald dchughes tabu nirfriedman nickluscombe ranb johncumbers djkt nicg mikaelhuss JeffR100 candypmcg emarker FAB-lab G4ID EBI-regulation Genetics-of-Gambling
  • On the Application of Probability Theory to Agricultural Experiments. Essay on Principles. Section 9.
    Statistical Science, Vol. 5, No. 4. (1990), pp. 465-472.
    by Jerzy Splawa-Neyman, DM Dabrowska, TP Speed
    posted to no-tag by slygent on 2008-01-13 18:42:46 as ** along with 1 person and 1 group jake Statistics_and_Social_Science
  • Multiple Superoxide Dismutase 1/Splicing Factor Serine Alanine 15 Variants Are Associated With the Development and Progression of Diabetic Nephropathy: The Diabetes Control and Complications Trial/Epidemiology of Diabetes Interventions and Complications Genetics Study
    Diabetes, Vol. 57, No. 1. (1 January 2008), pp. 218-228.
    by Hussam Al-Kateb, Andrew P Boright, Lucia Mirea, Xinlei Xie, Rinku Sutradhar, Alireza Mowjoodi, Bhupinder Bharaj, Michelle Liu, Jean M Bucksa, Valerie L Arends, Michael W Steffes, Patricia A Cleary, Wanjie Sun, John M Lachin, Paul S Thorner, Michael Ho, Amy J Mcknight, Peter A Maxwell, David A Savage, Kenneth K Kidd, Judith R Kidd, William C Speed, Trevor J Orchard, Rachel G Miller, Lei Sun, Shelley B Bull, Andrew D Paterson, The
    posted to snp ros dn by jyuh on 2007-12-31 04:12:05 as **
  • Characterizing a Joint Probability Distribution by Conditionals
    by Andrew Gelman, TP Speed
    posted to conditionally-specified-distributions by pcarbo on 2007-12-08 03:18:54 as ***
  • Comparison of Discrimination Methods for the Classification of Tumors Using Gene Expression Data
    Journal of the American Statistical Association, Vol. 97, No. 457. (2002), pp. 77-??.
    by Sandrine Dudoit, Jane Fridlyand, Terence P Speed
    posted to all comps jim by hpiwowar on 2007-12-01 16:26:12 as **
  • Genomic profiling and expression studies reveal both positive and negative activities for the Drosophila Myb MuvB/dREAM complex in proliferating cells
    Genes Dev. (31 October 2007), gad.1600107.
    by Daphne Georlette, Soyeon Ahn, David M Macalpine, Evelyn Cheung, Peter W Lewis, Eileen L Beall, Stephen P Bell, Terry Speed, Robert J Manak, Michael R Botchan
    posted to dna_replication transcriptional_regulatory_complex by cwbrown to the group EisenLab on 2007-11-07 21:23:13 as **
  • Exploration, normalization, and genotype calls of high-density oligonucleotide SNP array data
    Biostatistics, Vol. 8, No. 2. (April 2007), pp. 485-499.
    by Carvalho, Benilton, Bengtsson, Henrik, Speed, P Terence, Irizarry, A Rafael
    posted to no-tag by jyuh on 2007-11-01 09:47:49 as ** along with 1 person cpnP
  • Normalization for cDNA microarray data: a robust composite method addressing single and multiple slide systematic variation.
    Nucleic Acids Res, Vol. 30, No. 4. (15 February 2002)
    by YH Yang, S Dudoit, P Luu, DM Lin, V Peng, J Ngai, TP Speed
    posted to microarray by debasis on 2007-10-16 07:46:12 as ** along with 3 people gupton textoris talponer
  • Phat--a gene finding program for Plasmodium falciparum.
    Mol Biochem Parasitol, Vol. 118, No. 2. (December 2001), pp. 167-174.
    by SE Cawley, AI Wirth, TP Speed
    posted to falciparum genome sequences by mdimon on 2007-10-01 22:00:50 as **
  • Microarray expression profiling identifies genes with altered expression in HDL-deficient mice.
    Genome Res, Vol. 10, No. 12. (December 2000), pp. 2022-2029.
    by MJ Callow, S Dudoit, EL Gong, TP Speed, EM Rubin
    posted to no-tag by mcristinaconti on 2007-09-18 11:30:15 as *** along with 1 person ugengma
  • Aromatase--a brief overview.
    Annu Rev Physiol, Vol. 64 (2002), pp. 93-127.
    by ER Simpson, C Clyne, G Rubin, WC Boon, K Robertson, K Britt, C Speed, M Jones
    posted to adipose aromatase cyp19 gene regulation review by FW_Gibb on 2007-08-29 14:38:02 as **
  • Evolution: A taste for mimicry
    Nature, Vol. 433, No. 7023. (20 January 2005), pp. 205-207.
    by Graeme D Ruxton, Michael P Speed
    posted to evolution mimicry by jasonn on 2007-08-28 17:48:24 as ** along with 2 groups aLifeComplexSys ComplexAdaptiveSystems
  • Normalization of cDNA microarray data
    Methods, Vol. 31, No. 4. (December 2003), pp. 265-273.
    by Gordon K Smyth, Terry Speed
    posted to microarray tesi by talponer on 2007-08-16 14:59:23 as **
  • Deriving statistical models for predicting peptide tandem MS product ion intensities.
    Biochem Soc Trans, Vol. 31, No. Pt 6. (December 2003), pp. 1479-1483.
    by F Schütz, EA Kapp, RJ Simpson, TP Speed
    posted to peptide-identification peptide-spectrum-score proteomics tandem-mass-spectrometry by nedwards on 2007-08-09 15:25:31 as **
  • Exploration, Normalization, and Genotype Calls of High Density Oligonucleotide SNP Array Data.
    Biostatistics (22 December 2006)
    by Benilton Carvalho, Henrik Bengtsson, Terence P P Speed, Rafael A A Irizarry
    posted to no-tag by jyuh on 2007-08-08 07:11:50 as ** along with 1 person jfr
  • A benchmark for Affymetrix GeneChip expression measures.
    Bioinformatics, Vol. 20, No. 3. (12 February 2004), pp. 323-331.
    by LM Cope, RA Irizarry, HA Jaffee, Z Wu, TP Speed
    posted to affymetrix microarray by ghattem on 2007-08-03 22:42:55 as ** along with 1 person Dax42
  • notes Evolutionarily stable defence and signalling of that defence
    Journal of Theoretical Biology, Vol. 242, No. 1. (7 September 2006), pp. 32-43.
    by M Broom, MP Speed, GD Ruxton
    posted to evolutionary_dynamics signaling by mtkn on 2007-07-02 09:19:42 as read
  • Genome of the marsupial Monodelphis domestica reveals innovation in non-coding sequences
    Nature, Vol. 447, No. 7141., pp. 167-177.
    by Tarjei S Mikkelsen, Matthew J Wakefield, Bronwen Aken, Chris T Amemiya, Jean L Chang, Shannon Duke, Manuel Garber, Andrew J Gentles, Leo Goodstadt, Andreas Heger, Jerzy Jurka, Michael Kamal, Evan Mauceli, Stephen MJ Searle, Ted Sharpe, Michelle L Baker, Mark A Batzer, Panayiotis V Benos, Katherine Belov, Michele Clamp, April Cook, James Cuff, Radhika Das, Lance Davidow, Janine E Deakin, Melissa J Fazzari, Jacob L Glass, Manfred Grabherr, John M Greally, Wanjun Gu, Timothy A Hore, Gavin A Huttley, Michael Kleber, Randy L Jirtle, Edda Koina, Jeannie T Lee, Shaun Mahony, Marco A Marra, Robert D Miller, Robert D Nicholls, Mayumi Oda, Anthony T Papenfuss, Zuly E Parra, David D Pollock, David A Ray, Jacqueline E Schein, Terence P Speed, Katherine Thompson, John L Vandeberg, Claire M Wade, Jerilyn A Walker, Paul D Waters, Caleb Webber, Jennifer R Weidman, Xiaohui Xie, Michael C Zody, Jennifer, Chris P Ponting, Matthew Breen, Paul B Samollow, Eric S Lander, Kerstin Lindblad-Toh
    posted to no-tag by tale on 2007-05-10 19:19:00 as *** along with 1 person and 2 groups dchughes G4ID Genetics-of-Gambling
  • Global analyses of mRNA translational control during early Drosophila embryogenesis
    Genome Biology, Vol. 8 (22 April 2007), R63.
    by Xiaoli Qin, Soyeon Ahn, Terence P Speed, Gerald M Rubin
    posted to no-tag by adepace on 2007-04-28 01:31:18 as *** along with 1 group EisenLab
  • Sequence and comparative analysis of the chicken genome provide unique perspectives on vertebrate evolution.
    Nature, Vol. 432, No. 7018. (9 December 2004), pp. 695-716.
    by LW Hillier, W Miller, E Birney, W Warren, RC Hardison, CP Ponting, P Bork, DW Burt, MA Groenen, ME Delany, JB Dodgson, AT Chinwalla, PF Cliften, SW Clifton, KD Delehaunty, C Fronick, RS Fulton, TA Graves, C Kremitzki, D Layman, V Magrini, JD McPherson, TL Miner, P Minx, WE Nash, MN Nhan, JO Nelson, LG Oddy, CS Pohl, J Randall-Maher, SM Smith, JW Wallis, SP Yang, MN Romanov, CM Rondelli, B Paton, J Smith, D Morrice, L Daniels, HG Tempest, L Robertson, JS Masabanda, DK Griffin, A Vignal, V Fillon, L Jacobbson, S Kerje, L Andersson, RP Crooijmans, J Aerts, JJ van der Poel, H Ellegren, RB Caldwell, SJ Hubbard, DV Grafham, AM Kierzek, SR McLaren, IM Overton, H Arakawa, KJ Beattie, Y Bezzubov, PE Boardman, JK Bonfield, MD Croning, RM Davies, MD Francis, SJ Humphray, CE Scott, RG Taylor, C Tickle, WR Brown, J Rogers, JM Buerstedde, SA Wilson, L Stubbs, I Ovcharenko, L Gordon, S Lucas, MM Miller, H Inoko, T Shiina, J Kaufman, J Salomonsen, K Skjoedt, GK Wong, J Wang, B Liu, J Wang, J Yu, H Yang, M Nefedov, M Koriabine, PJ Dejong, L Goodstadt, C Webber, NJ Dickens, I Letunic, M Suyama, D Torrents, C von Mering, EM Zdobnov, K Makova, A Nekrutenko, L Elnitski, P Eswara, DC King, S Yang, S Tyekucheva, A Radakrishnan, RS Harris, F Chiaromonte, J Taylor, J He, M Rijnkels, S Griffiths-Jones, A Ureta-Vidal, MM Hoffman, J Severin, SM Searle, AS Law, D Speed, D Waddington, Z Cheng, E Tuzun, E Eichler, Z Bao, P Flicek, DD Shteynberg, MR Brent, JM Bye, EJ Huckle, S Chatterji, C Dewey, L Pachter, A Kouranov, Z Mourelatos, AG Hatzigeorgiou, AH Paterson, R Ivarie, M Brandstrom, E Axelsson, N Backstrom, S Berlin, MT Webster, O Pourquie, A Reymond, C Ucla, SE Antonarakis, M Long, JJ Emerson, E Betrán, I Dupanloup, H Kaessmann, AS Hinrichs, G Bejerano, TS Furey, RA Harte, B Raney, A Siepel, WJ Kent, D Haussler, E Eyras, R Castelo, JF Abril, S Castellano, F Camara, G Parra, R Guigo, G Bourque, G Tesler, PA Pevzner, A Smit, LA Fulton, ER Mardis, RK Wilson,
    posted to chicken by sleepingcell to the group Bioinformatics on 2007-04-03 05:26:44 as **** along with 5 people and 3 groups aprasad dchughes dullhunk harikrishna djkt hst-bmi G4ID Genetics-of-Gambling
  • Modeling interference in genetic recombination.
    Genetics, Vol. 139, No. 2. (February 1995), pp. 1031-1044.
    by MS McPeek, TP Speed
    posted to genetics by madhadron on 2007-03-28 16:47:47 as **
  • Deconvolution of Sparse Positive Spikes
    Journal of Computational & Graphical Statistics, Vol. 13, No. 4., 853.
    by Lei M Li, Terence P Speed
    posted to no-tag by innersmile on 2007-01-12 15:22:23 as ** along with 1 group diffusion-MRI
  • A genotype calling algorithm for affymetrix SNP arrays
    Bioinformatics, Vol. 22, No. 1. (1 January 2006), pp. 7-12.
    by Nusrat Rabbee, Terence P Speed
    posted to snp-arrays by jfr on 2007-01-12 13:58:36 as read along with 4 people pcahan1 beniltoncarvalho ashandanj djkt
  • Evolving gene/transcript definitions significantly alter the interpretation of GeneChip data.
    Nucleic Acids Res, Vol. 33, No. 20. (2005)
    by M Dai, P Wang, AD Boyd, G Kostov, B Athey, EG Jones, WE Bunney, RM Myers, TP Speed, H Akil, SJ Watson, F Meng
    posted to annotation affy by jfr on 2007-01-10 10:44:38 as read along with 2 people pcahan1 tuck
  • Perceived contrast following adaptation to gratings of different orientations.
    Vision Res, Vol. 36, No. 12. (June 1996), pp. 1811-1818.
    by J Ross, HD Speed
    posted to no-tag by jagged_arrow on 2006-12-08 20:09:41 as read
  • Developing a SNP panel for forensic identification of individuals
    Forensic Science International, Vol. 164, No. 1. (1 December 2006), pp. 20-32.
    by Kenneth K Kidd, Andrew J Pakstis, William C Speed, Elena L Grigorenko, Sylvester L Kajuna, Nganyirwa J Karoma, Selemani Kungulilo, Jong-Jin Kim, Ru-Band Lu, Adekunle Odunsi
    posted to snps forensic by dchughes on 2006-11-02 12:18:40 as ** along with 2 groups G4ID Genetics-of-Gambling
  • notes Over- and underrepresentation of short DNA words in herpesvirus genomes.
    J Comput Biol, Vol. 3, No. 3. (1996), pp. 345-360.
    by MY Leung, GM Marsh, TP Speed
    posted to motifpaper by dquest on 2006-09-29 20:39:15 as **
  • On the utility of data from the International HapMap Project for Australian association studies
    Human Genetics, Vol. 119, No. 1 - 2. (March 2006), pp. 220-222.
    by Jim Stankovich, Charles J Cox, Rachel B Tan, Douglas S Montgomery, Stewart J Huxtable, Justin P Rubio, Margaret G Ehm, Laura Johnson, Helmut Butzkueven, Trevor J Kilpatrick, Terence P Speed, Allen D Roses, Melanie Bahlo, Simon J Foote
    posted to no-tag by ashandanj on 2006-07-18 03:05:10 as **
  • Atypical regions in large genomic DNA sequences.
    Proc Natl Acad Sci U S A, Vol. 91, No. 15. (19 July 1994), pp. 7134-7138.
    by S Scherer, MS McPeek, TP Speed
    posted to randomwalks by AaronDarling on 2006-07-04 00:18:18 as **
  • Comparison of Discrimination Methods for the Classification of Tumors Using Gene Expression Data
    Journal of the American Statistical Association, Vol. 97, No. 457. (2002), pp. 77-87.
    by Sandrine Dudoit, Jane Fridlyand, Terence P Speed
    posted to fs microarray by chiahuey on 2006-06-13 06:05:24 as read
  • Introductory Remarks on Neyman (1923)
    Statistical Science, Vol. 5, No. 4. (1990), pp. 463-464.
    by TP Speed
    posted to neyman statistics by jake on 2005-05-22 18:51:37 as ** along with 1 group Statistics_and_Social_Science
  • Experimental design and low-level analysis of microarray data.
    Int Rev Neurobiol, Vol. 60 (2004), pp. 25-58.
    by BM Bolstad, F Collin, KM Simpson, RA Irizarry, TP Speed
    posted to no-tag by gupton on 2005-04-21 14:28:21 as **
  • Machine Learning in Low-level Microarray Analysis
    by Benjamin IP Rubinstein, Jon Mcauliffe, Simon Cawley, Marimuthu Palaniswami, Kotagiri Ramamohanarao, Terence P Speed
    posted to microarray by davidr on 2005-03-29 22:58:18 as ***
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