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Autor Siggia [32 articles]

Neu eingetragene Papers vom Autor: Siggia.
  • Stochastic gene expression in a single cell.
    Science, Vol. 297, No. 5584. (16 August 2002), pp. 1183-1186.
    by MB Elowitz, AJ Levine, ED Siggia, PS Swain
    posted to noise modelling model grn gene-regulation gene-networks ecoli by mjoach on 2008-07-18 14:54:54 as ** along with 16 people and 3 groups austin jjray dylanwalker tvdbulck balicea jiny wilvc madhadron cottrell mmt litam mhucka timflutre margaritis roland_ewald ptupper UWNICU dIEMoSIRIS MoSi-Rostock
  • Positive feedback of G1 cyclins ensures coherent cell cycle entry
    Nature, Vol. 454, No. 7202., pp. 291-296.
    by Jan M Skotheim, Stefano Di Talia, Eric D Siggia, Frederick R Cross
    posted to positive_feedback feedback cell_cycle by jjray on 2008-07-16 21:32:50 as **
  • Computational methods for transcriptional regulation.
    Curr Opin Genet Dev, Vol. 15, No. 2. (April 2005), pp. 214-221.
    by ED Siggia
    posted to review by nklee on 2008-07-16 03:57:31 as ** along with 5 people and 2 groups Borelli bertelsen barry dpollard koller Bioinformatics EisenLab
  • Protein-DNA binding specificity predictions with structural models
    Nucleic Acids Research, Vol. 33, No. 18. (2005), pp. 5781-5798.
    by Alexandre V Morozov, James J Havranek, David Baker, Eric D Siggia
    posted to protein_dna by aalibes on 2008-07-10 14:03:15 as ** along with 1 person medic0747
  • Regulatory element detection using correlation with expression.
    Nat Genet, Vol. 27, No. 2. (February 2001), pp. 167-171.
    by HJ Bussemaker, H Li, ED Siggia
    posted to no-tag by isimpson on 2008-07-02 16:02:36 as ***** along with 4 people and 2 groups tvdbulck dpollard nickluscombe heliopais EisenLab EBI-regulation
  • PhyloGibbs: A Gibbs Sampling Motif Finder That Incorporates Phylogeny.
    PLoS Comput Biol, Vol. 1, No. 7. (December 2005)
    by R Siddharthan, ED Siggia, E van Nimwegen
    posted to no-tag by isimpson on 2008-07-02 14:12:09 as ** along with 11 people and 3 groups ana postrational dquest AaronDarling nickluscombe noano adsmitty lusk lilou idonaldson yevishere structural_bioinformatics Bioinformatics EBI-regulation
  • Intrinsic and extrinsic contributions to stochasticity in gene expression.
    Proc Natl Acad Sci U S A, Vol. 99, No. 20. (1 October 2002), pp. 12795-12800.
    by PS Swain, MB Elowitz, ED Siggia
    posted to stochastic noise mathematical_model gene_regulation gene_expression by jjray on 2008-07-01 18:08:59 as ** along with 5 people JKelly555 madhadron balabu timflutre margaritis
  • The evolution of DNA regulatory regions for proteo-gamma bacteria by interspecies comparisons.
    Genome Res, Vol. 12, No. 2. (February 2002), pp. 298-308.
    by N Rajewsky, ND Socci, M Zapotocky, ED Siggia
    posted to 200806_prop by wenhan on 2008-06-25 21:21:17 as ** along with 1 person and 1 group cisevol cis-regulatory-evolution
  • Cross-Species Comparison of Drosophila Male Accessory Gland Protein Genes
    Genetics, Vol. 171, No. 1. (1 September 2005), pp. 131-143.
    by JL Mueller, Ravi K Ram, LA Mcgraw, Bloch, ED Siggia, AG Clark, CF Aquadro, MF Wolfner
    posted to protein molevoltestis gland gene drosophila comparative acp accessory by skumagai on 2008-06-06 14:32:15 as read along with 1 person and 1 group penka Nie
  • Gene expression from random libraries of yeast promoters.
    Genetics, Vol. 172, No. 4. (April 2006), pp. 2113-2122.
    by M Ligr, R Siddharthan, FR Cross, ED Siggia
    posted to no-tag by tresch on 2008-06-04 22:52:49 as read along with 1 person lusk
  • Sequence Context affects the rate of short insertions and deletions in flies and primates
    Genome Biology, Vol. 9 (21 February 2008), R37.
    by Amos Tanay, Eric D Siggia
    posted to mutation_rate indel human_genome evolution drosophila by aprasad on 2008-05-19 15:38:57 as ** along with 5 people brant djkt lusk biomcgary gjuggler
  • Statistical mechanics of supercoiled DNA.
    Physical review. E, Statistical physics, plasmas, fluids, and related interdisciplinary topics, Vol. 52, No. 3. (September 1995), pp. 2912-2938.
    by JF Marko, ED Siggia
    posted to dna_coiling by dbikard on 2008-05-14 13:04:06 as **
  • Sequence turnover and tandem repeats in cis-regulatory modules in drosophila.
    Mol Biol Evol, Vol. 22, No. 4. (April 2005), pp. 874-885.
    by S Sinha, ED Siggia
    posted to drosophila cis_regulatory_evolution by emptyhb on 2008-05-06 21:33:36 as ** along with 2 people and 1 group operon cisevol cis-regulatory-evolution
  • From the Cover: Building a dictionary for genomes: Identification of presumptive regulatory sites by statistical analysis
    PNAS, Vol. 97, No. 18. (29 August 2000), pp. 10096-10100.
    by Harmen J Bussemaker, Hao Li, Eric D Siggia
    posted to no-tag by ep161302 on 2008-04-23 17:29:44 as ** along with 3 people and 2 groups ana dquest johncumbers structural_bioinformatics Bioinformatics
  • Modeling RNA folding paths with pseudoknots: Application to hepatitis delta virus ribozyme
    PNAS, Vol. 97, No. 12. (6 June 2000), pp. 6515-6520.
    by Herve Isambert, Eric D Siggia
    posted to folding kinefold kinetics pseudoknot rna by austin on 2008-04-15 15:48:23 as read along with 3 people eckart_bindewald Hosna Kiarostami
  • Computational detection of genomic cis-regulatory modules applied to body patterning in the early Drosophila embryo.
    BMC Bioinformatics, Vol. 3 (24 October 2002)
    by N Rajewsky, M Vergassola, U Gaul, ED Siggia
    posted to no-tag by csdhwang on 2008-03-28 09:34:20 as ** along with 5 people and 1 group ansobol indigoviolet adepace koller Stew EisenLab
  • Stubb: a program for discovery and analysis of cis-regulatory modules.
    Nucleic Acids Res, Vol. 34, No. Web Server issue. (1 July 2006)
    by S Sinha, Y Liang, E Siggia
    posted to no-tag by csdhwang on 2008-03-28 09:31:18 as ** along with 2 people and 1 group indigoviolet Stew EisenLab
  • Tracking the in vivo evolution of multidrug resistance in Staphylococcus aureus by whole-genome sequencing.
    Proc Natl Acad Sci U S A, Vol. 104, No. 22. (29 May 2007), pp. 9451-9456.
    by MM Mwangi, SW Wu, Y Zhou, K Sieradzki, H de Lencastre, P Richardson, D Bruce, E Rubin, E Myers, ED Siggia, A Tomasz
    posted to staph by Xavier on 2008-03-04 15:53:44 as ** along with 1 person aprasad
  • notes Conservation of regulatory elements between two species of Drosophila.
    BMC Bioinformatics, Vol. 4 (20 November 2003)
    by E Emberly, N Rajewsky, ED Siggia
    posted to cis_regulatory_elements cis_regulatory_evolution drosophila motif_searching by emptyhb on 2008-02-24 21:43:41 as *** along with 1 person and 1 group dquest Bioinformatics
  • Transcriptional Control in the Segmentation Gene Network of Drosophila
    PLoS Biology, Vol. 2, No. 9. (1 September 2004), e271.
    by Mark D Schroeder, Michael Pearce, John Fak, Hongqing Fan, Ulrich Unnerstall, Eldon Emberly, Nikolaus Rajewsky, Eric D Siggia, Ulrike Gaul
    posted to cis_regulatory_elements drosophila motif_searching pattern_formation transcriptional_regulation by emptyhb on 2008-01-19 22:49:02 as **** along with 5 people and 3 groups indigoviolet dpollard adepace wrowell dlmace EisenLab Cline_lab UH - Computational Biology
  • Deriving structure from evolution: metazoan segmentation
    Mol Syst Biol, Vol. 3 (18 December 2007)
    by Paul Francois, Vincent Hakim, Eric D Siggia
    posted to evolution by Ema on 2008-01-16 11:29:57 as ** along with 3 people grahamc cjeans biomcgary
  • Cross-species comparison significantly improves genome-wide prediction of cis-regulatory modules in Drosophila.
    BMC Bioinformatics, Vol. 5 (9 September 2004)
    by S Sinha, MD Schroeder, U Unnerstall, U Gaul, ED Siggia
    posted to algorithm enhancer-prediction by indigoviolet to the group EisenLab on 2007-12-05 12:14:10 as **
  • A probabilistic method to detect regulatory modules.
    Bioinformatics, Vol. 19 Suppl 1 (2003)
    by S Sinha, E van Nimwegen, ED Siggia
    posted to algorithm cis-regulation clustering comparative computational by indigoviolet to the group EisenLab on 2007-11-19 03:27:58 as ** along with 3 people and 1 group dquest lusk cisevol cis-regulatory-evolution
  • The effects of molecular noise and size control on variability in the budding yeast cell cycle
    Nature, Vol. 448, No. 7156., pp. 947-951.
    by Stefano Di Talia, Jan M Skotheim, James M Bean, Eric D Siggia, Frederick R Cross
    posted to cellcycle noise yeast by madhadron on 2007-10-21 14:33:11 as ***** along with 2 people cactus rahulthadani
  • Connecting protein structure with predictions of regulatory sites.
    Proc Natl Acad Sci U S A (16 April 2007)
    by Alexandre V V Morozov, Eric D D Siggia
    posted to dna_binding protein-dna_interaction protein_structure transcription_factor by kaarsinogen on 2007-06-01 22:37:08 as *** along with 4 people and 2 groups ana aalibes johncumbers lusk structural_bioinformatics Bioinformatics
  • Coherence and Timing of Cell Cycle Start Examined at Single-Cell Resolution
    Molecular Cell, Vol. 21, No. 1. (6 January 2006), pp. 3-14.
    by James M Bean, Eric D Siggia, Frederick R Cross
    posted to flow_cytometry inside by lusk on 2007-05-08 01:30:44 as ***** along with 1 person balabu
  • Computational methods for transcriptional regulation
    Current Opinion in Genetics & Development, Vol. 15, No. 2. (April 2005), pp. 214-221.
    by Eric D Siggia
    posted to inside review by lusk on 2007-04-25 21:08:54 as *****
  • notes Identification of the binding sites of regulatory proteins in bacterial genomes.
    Proc Natl Acad Sci U S A, Vol. 99, No. 18. (3 September 2002), pp. 11772-11777.
    by H Li, V Rhodius, C Gross, ED Siggia
    posted to motifsampling motifpaper by dquest on 2007-01-24 06:45:17 as ** along with 1 person kaarsinogen
  • Protein-DNA binding specificity predictions with structural models.
    Nucleic Acids Res, Vol. 33, No. 18. (2005), pp. 5781-5798.
    by AV Morozov, JJ Havranek, D Baker, ED Siggia
    posted to protein_dna by aalibes on 2006-10-11 13:49:17 as ** along with 1 person and 1 group oannes Regulomics_UCHSC
  • The role of proofreading in signal transduction specificity.
    Biophys J, Vol. 82, No. 6. (June 2002), pp. 2928-2933.
    by PS Swain, ED Siggia
    posted to biorefs gene_expression by cottrell on 2006-10-02 19:00:28 as **
  • notes Regulatory element detection using a probabilistic segmentation model.
    Proc Int Conf Intell Syst Mol Biol, Vol. 8 (2000), pp. 67-74.
    by HJ Bussemaker, H Li, ED Siggia
    posted to motifpaper by dquest on 2006-09-29 21:33:05 as **
  • notes Statistical Dynamics of Classical Systems
    Physical Review A, Vol. 8, No. 1. (July 1973), 423.
    by PC Martin, ED Siggia, HA Rose
    posted to dynamic-meanfield functional physics by keitokita on 2006-05-29 10:12:03 as *****
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