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Autor Rychlewski [26 articles]

Neu eingetragene Papers vom Autor: Rychlewski.
  • Practical lessons from protein structure prediction
    Nucleic Acids Research, Vol. 33, No. 6. (2005), pp. 1874-1891.
    by Krzysztof Ginalski, Nick V Grishin, Adam Godzik, Leszek Rychlewski
    posted to no-tag by granujilla on 2008-07-22 09:58:01 as *****
  • LigProf: A simple tool for in silico prediction of ligand-binding sites
    Journal of Molecular Modeling, Vol. 13, No. 3. (March 2007), pp. 445-455.
    by Koczyk, Grzegorz, Wyrwicz, Lucjan, Rychlewski, Leszek
    posted to software site server motif comparison binding by nickolay on 2008-07-08 14:38:30 as **
  • PDB-UF: database of predicted enzymatic functions for unannotated protein structures from structural genomics.
    BMC Bioinformatics, Vol. 7, No. 1. (6 February 2006)
    by M von Grotthuss, D Plewczynski, K Ginalski, L Rychlewski, EI Shakhnovich
    posted to pdb-uf by sim82 on 2008-06-30 12:45:28 as ** along with 2 people and 3 groups marcius caporaso biomedical-nlp BioinfoCIPF SGU-CIPF
  • Identification of IL-18RAP mRNA truncated splice variants in human testis and the other human tissues.
    Cytokine, Vol. 39, No. 3. (September 2007), pp. 178-183.
    by D Fiszer, N Rozwadowska, L Rychlewski, W Kosicki, M Kurpisz
    posted to il-18 by booker on 2008-05-29 01:06:59 as **
  • Pure Shears in the Mechanics of Materials
    Mathematics and Mechanics of Solids, Vol. 3, No. 4. (1 December 1998), pp. 471-503.
    by Andrzej Blinowski, Jan Rychlewski
    posted to elasticity by norris on 2008-05-06 13:39:37 as **
  • Protein structure prediction of CASP5 comparative modeling and fold recognition targets using consensus alignment approach and 3D assessment.
    Proteins, Vol. 53 Suppl 6 (2003), pp. 410-417.
    by K Ginalski, L Rychlewski
    posted to folding by nigham on 2008-04-29 10:35:15 as * along with 1 person dgront
  • The challenge of protein structure determination lessons from structural genomics
    Protein Sci, Vol. 16, No. 11. (1 November 2007), pp. 2472-2482.
    by Lukasz Slabinski, Lukasz Jaroszewski, Ana P Rodrigues, Leszek Rychlewski, Ian A Wilson, Scott A Lesley, Adam Godzik
    posted to bioinformatics protein proteomics structure by rph on 2008-03-17 17:43:17 as ** along with 2 people ana jwm
  • 3D-Jury: a simple approach to improve protein structure predictions.
    Bioinformatics, Vol. 19, No. 8. (22 May 2003), pp. 1015-1018.
    by K Ginalski, A Elofsson, D Fischer, L Rychlewski
    posted to thesis by mijam on 2008-03-02 13:50:25 as ** along with 3 people karbak dgront schuylrp
  • Target specific compound identification using a support vector machine.
    Comb Chem High Throughput Screen, Vol. 10, No. 3. (March 2007), pp. 189-196.
    by D Plewczynski, M von Grotthuss, SA Spieser, L Rychlewski, LS Wyrwicz, K Ginalski, U Koch
    posted to scoring_function by insilico on 2008-01-08 23:39:54 as *****
  • MaxSub: an automated measure for the assessment of protein structure prediction quality.
    Bioinformatics, Vol. 16, No. 9. (September 2000), pp. 776-785.
    by N Siew, A Elofsson, L Rychlewski, D Fischer
    posted to homology rmsd superposition by biehl on 2007-10-02 14:31:43 as read along with 3 people and 2 groups BragilMassoud marcius dgront BioinfoCIPF SGU-CIPF
  • ELM server: A new resource for investigating short functional sites in modular eukaryotic proteins.
    Nucleic Acids Res, Vol. 31, No. 13. (1 July 2003), pp. 3625-3630.
    by P Puntervoll, R Linding, C Gemünd, S Chabanis-Davidson, M Mattingsdal, S Cameron, DM Martin, G Ausiello, B Brannetti, A Costantini, F Ferrè, V Maselli, A Via, G Cesareni, F Diella, G Superti-Furga, L Wyrwicz, C Ramu, C McGuigan, R Gudavalli, I Letunic, P Bork, L Rychlewski, B Küster, M Helmer-Citterich, WN Hunter, R Aasland, TJ Gibson
    posted to rev_ref protein prediction peptides motifs linear database by Evangelia on 2007-10-01 18:28:15 as read along with 1 person chad_davis
  • Detecting distant homology with Meta-BASIC.
    Nucleic Acids Res, Vol. 32, No. Web Server issue. (1 July 2004)
    by K Ginalski, M von Grotthuss, NV Grishin, L Rychlewski
    posted to fold prediction protein recognition structure by schuylrp on 2007-08-03 20:50:23 as ** along with 1 person rabio
  • BOF: a novel family of bacterial OB-fold proteins.
    FEBS Lett, Vol. 567, No. 2-3. (4 June 2004), pp. 297-301.
    by K Ginalski, L Kinch, L Rychlewski, NV Grishin
    posted to beta-sheets drug-efflux fold-evolution structure by martainn on 2007-04-12 18:59:18 as **
  • Practical lessons from protein structure prediction.
    Nucleic Acids Res, Vol. 33, No. 6. (2005), pp. 1874-1891.
    by K Ginalski, NV Grishin, A Godzik, L Rychlewski
    posted to no-tag by mirzazadeh on 2007-03-17 21:48:02 as ** along with 7 people and 4 groups ana aalibes thaliana okarsligil marcius duartemolha dgront structural_bioinformatics Bioinformatics BioinfoCIPF SGU-CIPF
  • Elastic waves under unusual anisotropy
    pp. 2651-2666.
    by J Rychlewski
    posted to anisotropy elasticity by norris on 2007-01-03 18:33:35 as **
  • Comparison of proteins based on segments structural similarity.
    Acta Biochim Pol, Vol. 51, No. 1. (2004), pp. 161-172.
    by D Plewczynski, J Pas, M Von Grotthuss, L Rychlewski
    posted to review structural_alignment by dgront on 2006-09-08 12:28:59 as read
  • notes From fold predictions to function predictions: automation of functional site conservation analysis for functional genome predictions.
    Protein Sci, Vol. 8, No. 5. (May 1999), pp. 1104-1115.
    by B Zhang, L Rychlewski, K Pawłowski, JS Fetrow, J Skolnick, A Godzik
    posted to comps database major-proposal minor-proposal structural-biology by caporaso on 2006-09-04 20:10:34 as ***** along with 1 person and 1 group sriram_s biomedical-nlp
  • CAFASP-1: critical assessment of fully automated structure prediction methods.
    Proteins, Vol. Suppl 3 (1999), pp. 209-217.
    by D Fischer, C Barret, K Bryson, A Elofsson, A Godzik, D Jones, KJ Karplus, LA Kelley, RM MacCallum, K Pawowski, B Rost, L Rychlewski, M Sternberg
    posted to casp by dgront on 2006-05-25 12:53:07 as read
  • FFAS03: a server for profile--profile sequence alignments.
    Nucleic Acids Res, Vol. 33, No. Web Server issue. (1 July 2005)
    by L Jaroszewski, L Rychlewski, Z Li, W Li, A Godzik
    posted to sequence_alignment server threading by dgront on 2006-05-24 14:17:17 as **
  • Comparison of sequence profiles. Strategies for structural predictions using sequence information.
    Protein Sci, Vol. 9, No. 2. (February 2000), pp. 232-241.
    by L Rychlewski, L Jaroszewski, W Li, A Godzik
    posted to sequence_alignment tools by dgront on 2006-05-24 14:16:49 as read along with 2 people and 2 groups ana aalibes structural_bioinformatics Bioinformatics
  • LiveBench-1: continuous benchmarking of protein structure prediction servers.
    Protein Sci, Vol. 10, No. 2. (February 2001), pp. 352-361.
    by JM Bujnicki, A Elofsson, D Fischer, L Rychlewski
    posted to casp threading by dgront on 2006-05-23 17:06:55 as read
  • Structure prediction meta server.
    Bioinformatics, Vol. 17, No. 8. (August 2001), pp. 750-751.
    by JM Bujnicki, A Elofsson, D Fischer, L Rychlewski
    posted to server threading by dgront on 2006-05-23 17:06:34 as read
  • LiveBench-8: the large-scale, continuous assessment of automated protein structure prediction.
    Protein Sci, Vol. 14, No. 1. (January 2005), pp. 240-245.
    by L Rychlewski, D Fischer
    posted to casp server by dgront on 2006-05-23 17:04:33 as read along with 1 person karbak
  • Similarities and differences between nonhomologous proteins with similar folds: evaluation of threading strategies.
    Fold Des, Vol. 2, No. 5. (1997), pp. 307-317.
    by B Zhang, L Jaroszewski, L Rychlewski, A Godzik
    posted to homology_analogy protein_structure structure_prediction by ana on 2005-04-21 00:30:38 as ** along with 2 groups structural_bioinformatics Bioinformatics
  • Integrated web service for improving alignment quality based on segments comparison.
    BMC Bioinformatics, Vol. 5, No. 1. (22 July 2004)
    by D Plewczynski, L Rychlewski, Y Ye, L Jaroszewski, A Godzik
    posted to protein_sequence sequence_alignment sequence_comparison web_server by ana on 2005-03-09 20:27:37 as ** along with 2 groups structural_bioinformatics Bioinformatics
  • Improving the quality of twilight-zone alignments.
    Protein Sci, Vol. 9, No. 8. (August 2000), pp. 1487-1496.
    by L Jaroszewski, L Rychlewski, A Godzik
    posted to bioinf_methods bioinformatics protein_sequence sequence_comparison by barry on 2005-03-06 02:05:38 as **** along with 1 person and 2 groups ana structural_bioinformatics Bioinformatics
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