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Autor Down [23 articles]

Neu eingetragene Papers vom Autor: Down.
  • An integrated resource for genome-wide identification and analysis of human tissue-specific differentially methylated regions (tDMRs)
    Genome Res. (24 June 2008), gr.077479.108.
    by Vardhman Rakyan, Thomas Down, Natalie Thorne, Paul Flicek, Eugene Kulesha, Stefan Graf, Eleni Tomazou, Liselotte Backdahl, Nathan Johnson, Marils Herberth, Kevin Howe, David Jackson, Marcos Miretti, Heike Fiegler, John Marioni, Ewan Birney, Tim Hubbard, Nigel Carter, Simon Tavare, Stephan Beck
    posted to methylation histone chromatin chip bioinformatics by vega on 2008-06-30 15:15:46 as ** along with 1 person rschulz
  • NestedMICA: sensitive inference of over-represented motifs in nucleic acid sequence
    Nucleic Acids Research, Vol. 33, No. 5. (2005), pp. 1445-1453.
    by Thomas A Down, Tim J Hubbard
    posted to tf nestedsampling mcmc by waszak on 2008-06-30 01:08:45 as ** along with 3 people and 1 group lyongu dpollard dquest EisenLab
  • A census of human cancer genes.
    Nat Rev Cancer, Vol. 4, No. 3. (March 2004), pp. 177-183.
    by PA Futreal, L Coin, M Marshall, T Down, T Hubbard, R Wooster, N Rahman, MR Stratton
    posted to cancer-gene cancer by cerami on 2008-06-23 18:57:11 as read along with 13 people and 1 group Petersarkies jyuh aalibes jfr bedo ealloza frohike leelarcombe emb51 yeastyboy Ao_Li2007 lyndon kristen BioinfoCIPF
  • Ensembl 2008.
    Nucleic Acids Res (13 November 2007)
    by P Flicek, B L L Aken, K Beal, B Ballester, M Caccamo, Y Chen, L Clarke, G Coates, F Cunningham, T Cutts, T Down, S C C Dyer, T Eyre, S Fitzgerald, J Fernandez-Banet, S Gräf, S Haider, M Hammond, R Holland, K L L Howe, K Howe, N Johnson, A Jenkinson, A Kähäri, D Keefe, F Kokocinski, E Kulesha, D Lawson, I Longden, K Megy, P Meidl, B Overduin, A Parker, B Pritchard, A Prlic, S Rice, D Rios, M Schuster, I Sealy, G Slater, D Smedley, G Spudich, S Trevanion, A J J Vilella, J Vogel, S White, M Wood, E Birney, T Cox, V Curwen, R Durbin, X M M Fernandez-Suarez, J Herrero, T J P J Hubbard, A Kasprzyk, G Proctor, J Smith, A Ureta-Vidal, S Searle
    posted to genome database annotation by tharris on 2008-06-20 16:50:44 as ** along with 6 people dullhunk skumagai jyuh hpiwowar flexer daed
  • Ensembl 2007.
    Nucleic Acids Res, Vol. 35, No. Database issue. (January 2007)
    by TJ Hubbard, BL Aken, K Beal, B Ballester, M Caccamo, Y Chen, L Clarke, G Coates, F Cunningham, T Cutts, T Down, SC Dyer, S Fitzgerald, J Fernandez-Banet, S Graf, S Haider, M Hammond, J Herrero, R Holland, K Howe, K Howe, N Johnson, A Kahari, D Keefe, F Kokocinski, E Kulesha, D Lawson, I Longden, C Melsopp, K Megy, P Meidl, B Ouverdin, A Parker, A Prlic, S Rice, D Rios, M Schuster, I Sealy, J Severin, G Slater, D Smedley, G Spudich, S Trevanion, A Vilella, J Vogel, S White, M Wood, T Cox, V Curwen, R Durbin, XM Fernandez-Suarez, P Flicek, A Kasprzyk, G Proctor, S Searle, J Smith, A Ureta-Vidal, E Birney
    posted to molevoltestis genome ensembl database 2007 by skumagai on 2008-06-06 13:59:19 as read along with 8 people and 1 group kuhn dullhunk massivemayhem incovoma Garamonfok asddd loopback007 flexer Cancer_Stem_Cells
  • Large-Scale Discovery of Promoter Motifs in Drosophila melanogaster
    PLoS Computational Biology, Vol. 3, No. 1. (1 January 2007), e7.
    by Thomas A Down, Casey M Bergman, Jing Su, Tim J Hubbard
    posted to no-tag by isimpson on 2008-05-22 17:17:04 as ***** along with 6 people and 1 group indigoviolet dpollard dquest SeungjoonOh nklee emptyhb EisenLab
  • DNA methylation profiling of human chromosomes 6, 20 and 22.
    Nat Genet (29 October 2006)
    by Florian Eckhardt, Joern Lewin, Rene Cortese, Vardhman K K Rakyan, John Attwood, Matthias Burger, John Burton, Tony V V Cox, Rob Davies, Thomas A A Down, Carolina Haefliger, Roger Horton, Kevin Howe, David K K Jackson, Jan Kunde, Christoph Koenig, Jennifer Liddle, David Niblett, Thomas Otto, Roger Pettett, Stefanie Seemann, Christian Thompson, Tony West, Jane Rogers, Alex Olek, Kurt Berlin, Stephan Beck
    posted to no-tag by jo_davies on 2008-04-30 08:39:10 as ** along with 3 people plofje shigepong epigenetics
  • The Ensembl genome database project
    Nucl. Acids Res., Vol. 30, No. 1. (1 January 2002), pp. 38-41.
    by T Hubbard, D Barker, E Birney, G Cameron, Y Chen, L Clark, T Cox, J Cuff, V Curwen, T Down, R Durbin, E Eyras, J Gilbert, M Hammond, L Huminiecki, A Kasprzyk, H Lehvaslaiho, P Lijnzaad, C Melsopp, E Mongin, R Pettett, M Pocock, S Potter, A Rust, E Schmidt, S Searle, G Slater, J Smith, W Spooner, A Stabenau, J Stalker, E Stupka, A Ureta-Vidal, I Vastrik, M Clamp
    posted to hubbard-02 databases by CitoJam on 2008-04-26 19:23:34 as * along with 3 people incovoma kynn raylim
  • An overview of Ensembl.
    Genome Res, Vol. 14, No. 5. (May 2004), pp. 925-928.
    by E Birney, TD Andrews, P Bevan, M Caccamo, Y Chen, L Clarke, G Coates, J Cuff, V Curwen, T Cutts, T Down, E Eyras, XM Fernandez-Suarez, P Gane, B Gibbins, J Gilbert, M Hammond, HR Hotz, V Iyer, K Jekosch, A Kahari, A Kasprzyk, D Keefe, S Keenan, H Lehvaslaiho, G McVicker, C Melsopp, P Meidl, E Mongin, R Pettett, S Potter, G Proctor, M Rae, S Searle, G Slater, D Smedley, J Smith, W Spooner, A Stabenau, J Stalker, R Storey, A Ureta-Vidal, KC Woodwark, G Cameron, R Durbin, A Cox, T Hubbard, M Clamp
    posted to no-tag by mcgannd on 2008-04-25 15:10:55 as ** along with 6 people and 1 group dragonrez chad_davis indigoviolet dullhunk incovoma Nilza EisenLab
  • Ensembl 2005.
    Nucleic Acids Res, Vol. 33, No. Database issue. (1 January 2005)
    by T Hubbard, D Andrews, M Caccamo, G Cameron, Y Chen, M Clamp, L Clarke, G Coates, T Cox, F Cunningham, V Curwen, T Cutts, T Down, R Durbin, XM Fernandez-Suarez, J Gilbert, M Hammond, J Herrero, H Hotz, K Howe, V Iyer, K Jekosch, A Kahari, A Kasprzyk, D Keefe, S Keenan, F Kokocinsci, D London, I Longden, G McVicker, C Melsopp, P Meidl, S Potter, G Proctor, M Rae, D Rios, M Schuster, S Searle, J Severin, G Slater, D Smedley, J Smith, W Spooner, A Stabenau, J Stalker, R Storey, S Trevanion, A Ureta-Vidal, J Vogel, S White, C Woodwark, E Birney
    posted to thesis number_of_genes ensembl by brant on 2008-04-24 06:02:18 as ** along with 5 people and 1 group raizada Cortel pcahan1 chad_davis leelarcombe Raizada-Lab
  • On the role of Rouch's theorem in queueing analysis
    by JW Cohen, DG Down
    posted to theorem rouchs principle of argument by amalique on 2008-04-23 13:40:23 as ****
  • The transcriptional landscape of the mammalian genome.
    Science, Vol. 309, No. 5740. (2 September 2005), pp. 1559-1563.
    by P Carninci, T Kasukawa, S Katayama, J Gough, MC Frith, N Maeda, R Oyama, T Ravasi, B Lenhard, C Wells, R Kodzius, K Shimokawa, VB Bajic, SE Brenner, S Batalov, AR Forrest, M Zavolan, MJ Davis, LG Wilming, V Aidinis, JE Allen, A Ambesi-Impiombato, R Apweiler, RN Aturaliya, TL Bailey, M Bansal, L Baxter, KW Beisel, T Bersano, H Bono, AM Chalk, KP Chiu, V Choudhary, A Christoffels, DR Clutterbuck, ML Crowe, E Dalla, BP Dalrymple, B de Bono, G Della Gatta, D di Bernardo, T Down, P Engstrom, M Fagiolini, G Faulkner, CF Fletcher, T Fukushima, M Furuno, S Futaki, M Gariboldi, P Georgii-Hemming, TR Gingeras, T Gojobori, RE Green, S Gustincich, M Harbers, Y Hayashi, TK Hensch, N Hirokawa, D Hill, L Huminiecki, M Iacono, K Ikeo, A Iwama, T Ishikawa, M Jakt, A Kanapin, M Katoh, Y Kawasawa, J Kelso, H Kitamura, H Kitano, G Kollias, SP Krishnan, A Kruger, SK Kummerfeld, IV Kurochkin, LF Lareau, D Lazarevic, L Lipovich, J Liu, S Liuni, S McWilliam, M Madan Babu, M Madera, L Marchionni, H Matsuda, S Matsuzawa, H Miki, F Mignone, S Miyake, K Morris, S Mottagui-Tabar, N Mulder, N Nakano, H Nakauchi, P Ng, R Nilsson, S Nishiguchi, S Nishikawa, F Nori, O Ohara, Y Okazaki, V Orlando, KC Pang, WJ Pavan, G Pavesi, G Pesole, N Petrovsky, S Piazza, J Reed, JF Reid, BZ Ring, M Ringwald, B Rost, Y Ruan, SL Salzberg, A Sandelin, C Schneider, C Schönbach, K Sekiguchi, CA Semple, S Seno, L Sessa, Y Sheng, Y Shibata, H Shimada, K Shimada, D Silva, B Sinclair, S Sperling, E Stupka, K Sugiura, R Sultana, Y Takenaka, K Taki, K Tammoja, SL Tan, S Tang, MS Taylor, J Tegner, SA Teichmann, HR Ueda, E van Nimwegen, R Verardo, CL Wei, K Yagi, H Yamanishi, E Zabarovsky, S Zhu, A Zimmer, W Hide, C Bult, SM Grimmond, RD Teasdale, ET Liu, V Brusic, J Quackenbush, C Wahlestedt, JS Mattick, DA Hume, C Kai, D Sasaki, Y Tomaru, S Fukuda, M Kanamori-Katayama, M Suzuki, J Aoki, T Arakawa, J Iida, K Imamura, M Itoh, T Kato, H Kawaji, N Kawagashira, T Kawashima, M Kojima, S Kondo, H Konno, K Nakano, N Ninomiya, T Nishio, M Okada, C Plessy, K Shibata, T Shiraki, S Suzuki, M Tagami, K Waki, A Watahiki, Y Okamura-Oho, H Suzuki, J Kawai, Y Hayashizaki, ,
    posted to jfrbib by jfr on 2008-03-30 21:04:02 as read along with 16 people and 1 group setar miguel Cortel jwortman tuck lyongu eckart_bindewald troels_marstrand kaspermunch balicea forbiddenfaith99 mbj mtagaya olympos raylim gjuggler Bioinformatics
  • Integrating sequence and structural biology with DAS
    BMC Bioinformatics, Vol. 8, No. 1. (2007)
    by Andreas Prlic, Thomas Down, Eugene Kulesha, Robert Finn, Andreas Kahari, Tim Hubbard
    posted to no-tag by jyuh on 2008-03-30 13:13:21 as ** along with 4 people dullhunk massivemayhem ryanraaum niallhaslam
  • Ensembl 2006.
    Nucleic Acids Res, Vol. 34, No. Database issue. (1 January 2006)
    by E Birney, D Andrews, M Caccamo, Y Chen, L Clarke, G Coates, T Cox, F Cunningham, V Curwen, T Cutts, T Down, R Durbin, XM Fernandez-Suarez, P Flicek, S Gräf, M Hammond, J Herrero, K Howe, V Iyer, K Jekosch, A Kähäri, A Kasprzyk, D Keefe, F Kokocinski, E Kulesha, D London, I Longden, C Melsopp, P Meidl, B Overduin, A Parker, G Proctor, A Prlic, M Rae, D Rios, S Redmond, M Schuster, I Sealy, S Searle, J Severin, G Slater, D Smedley, J Smith, A Stabenau, J Stalker, S Trevanion, A Ureta-Vidal, J Vogel, S White, C Woodwark, TJ Hubbard
    posted to annotation ensembl genome by flexer on 2008-01-25 09:35:02 as read along with 8 people aalibes miguel bicko chad_davis dullhunk duartemolha fisherp frohike
  • NestedMICA as an ab initio protein motif discovery tool
    BMC Bioinformatics, Vol. 9 (14 January 2008), 19.
    by Mutlu Dogruel, Thomas A Down, Tim JP Hubbard
    posted to motif-discovery protein tool by idonaldson on 2008-01-21 10:44:04 as **
  • Computational Detection and Location of Transcription Start Sites in Mammalian Genomic DNA
    Genome Res., Vol. 12, No. 3. (1 March 2002), pp. 458-461.
    by Thomas A Down, Tim J Hubbard
    posted to bioinformatics biology computational genome genomics motif regulatory research search transcription by kmdaily on 2007-12-04 07:02:47 as **** along with 2 people smiddha olympos
  • Adding some SPICE to DAS.
    Bioinformatics, Vol. 21 Suppl 2 (1 September 2005)
    by A Prlić, TA Down, TJ Hubbard
    posted to das by dullhunk on 2007-10-29 14:07:06 as **
  • ddbRNA: detection of conserved secondary structures in multiple alignments.
    Bioinformatics, Vol. 19, No. 13. (1 September 2003), pp. 1606-1611.
    by D di Bernardo, T Down, T Hubbard
    posted to alignment conserved noncoding prediction rna by eckart_bindewald on 2006-12-21 14:09:32 as **** along with 2 people and 2 groups arcticrasta bsmagic Bioinformatics bioinplant
  • Large Scale Discovery of Promoter Motifs in Drosophila melanogaster
    PLoS Computational Biology, Vol. preprint, No. 2006. (1 December 2006), e7.eor.
    by Thomas A Down, Casey M Bergman, Jing Su, Tim J Hubbard
    posted to drosophila eisen_journal_club emily_presented motif prediction promoter round_robin by dpollard on 2006-12-13 22:18:54 as **** along with 1 group EisenLab
  • A machine learning strategy to identify candidate binding sites in human protein-coding sequence
    BMC Bioinformatics, Vol. 7 (26 September 2006), 419.
    by Thomas A Down, Bernard Leong, Tim JP Hubbard
    posted to binding site by gpalidwor on 2006-10-26 17:04:15 as **
  • BioJava: open source components for bioinformatics
    SIGBIO Newsl., Vol. 20, No. 2. (August 2000), pp. 10-12.
    by Matthew Pocock, Thomas Down, Tim Hubbard
    posted to software z-paper-strainer by jmeppley on 2006-07-10 23:36:56 as ** along with 1 person andymaule
  • Theoretical studies of the fullerenes: C34 to C70
    Chemical Physics Letters, Vol. 181, No. 2-3. (21 June 1991), pp. 105-111.
    by David E Manolopoulos, Jonathan C May, Sarah E Down
    posted to fullerene geometry theory by kupopo on 2005-11-16 20:25:23 as **
  • A Machine Learning Strategy to Identity Exonic Splice Enhancers in Human Protein-coding Sequence
    (16 March 2004)
    by Thomas A Down, Bernard Leong, Tim J Hubbard
    posted to comp_splice by brl on 2004-11-24 19:47:35
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