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Autor Celniker [22 articles]

Neu eingetragene Papers vom Autor: Celniker.
  • Comparative genomics of the eukaryotes.
    Science, Vol. 287, No. 5461. (24 March 2000), pp. 2204-2215.
    by GM Rubin, MD Yandell, JR Wortman, GL Gabor Miklos, CR Nelson, IK Hariharan, ME Fortini, PW Li, R Apweiler, W Fleischmann, JM Cherry, S Henikoff, MP Skupski, S Misra, M Ashburner, E Birney, MS Boguski, T Brody, P Brokstein, SE Celniker, SA Chervitz, D Coates, A Cravchik, A Gabrielian, RF Galle, WM Gelbart, RA George, LS Goldstein, F Gong, P Guan, NL Harris, BA Hay, RA Hoskins, J Li, Z Li, RO Hynes, SJ Jones, PM Kuehl, B Lemaitre, JT Littleton, DK Morrison, C Mungall, PH O'Farrell, OK Pickeral, C Shue, LB Vosshall, J Zhang, Q Zhao, XH Zheng, S Lewis
    posted to genome evolution by renatomilani on 2008-06-24 14:25:51 as ** along with 6 people CitoJam ujh jwortman rebeccahainess gurkanbebek cmor
  • A quantitative spatiotemporal atlas of gene expression in the Drosophila blastoderm.
    Cell, Vol. 133, No. 2. (18 April 2008), pp. 364-374.
    by CC Fowlkes, CL Hendriks, SV Keränen, GH Weber, O Rübel, MY Huang, S Chatoor, AH DePace, L Simirenko, C Henriquez, A Beaton, R Weiszmann, S Celniker, B Hamann, DW Knowles, MD Biggin, MB Eisen, J Malik
    posted to cshl_suggestions by adepace on 2008-06-13 17:36:10 as ** along with 2 people cite0000 Doug
  • Computational identification of developmental enhancers: conservation and function of transcription factor binding-site clusters in Drosophila melanogaster and Drosophila pseudoobscura.
    Genome Biol, Vol. 5, No. 9. (2004)
    by BP Berman, BD Pfeiffer, TR Laverty, SL Salzberg, GM Rubin, MB Eisen, SE Celniker
    posted to enhancerprediction by maximilianh on 2008-06-12 12:17:31 as ** along with 6 people and 2 groups mbeisen indigoviolet adepace Stew nklee cisevol EisenLab cis-regulatory-evolution
  • Discovery of functional elements in 12 Drosophila genomes using evolutionary signatures
    Nature, Vol. 450, No. 7167., pp. 219-232.
    by Alexander Stark, Michael F Lin, Pouya Kheradpour, Jakob S Pedersen, Leopold Parts, Joseph W Carlson, Madeline A Crosby, Matthew D Rasmussen, Sushmita Roy, Ameya N Deoras, Graham J Ruby, Julius Brennecke, Harvard F Curators, Berkeley, Emily Hodges, Angie S Hinrichs, Anat Caspi, Benedict Paten, Seung-Won Park, Mira V Han, Morgan L Maeder, Benjamin J Polansky, Bryanne E Robson, Stein Aerts, Jacques van Helden, Bassem Hassan, Donald G Gilbert, Deborah A Eastman, Michael Rice, Michael Weir, Matthew W Hahn, Yongkyu Park, Colin N Dewey, Lior Pachter, James W Kent, David Haussler, Eric C Lai, David P Bartel, Gregory J Hannon, Thomas C Kaufman, Michael B Eisen, Andrew G Clark, Douglas Smith, Susan E Celniker, William M Gelbart, Manolis Kellis
    posted to genomics evolution drosophila by shuzhens on 2008-06-07 07:12:56 as ** along with 13 people and 2 groups PetrovLab operon tmmurali djkt timflutre stajich lp2 cabbagezs nklee hpaces roys caseybrown gjuggler csb_journal_club_public Berkeley Mycology
  • Improved repeat identification and masking in Dipterans
    Gene, Vol. 389, No. 1. (1 March 2007), pp. 1-9.
    by Christopher D Smith, Robert C Edgar, Mark D Yandell, Douglas R Smith, Susan E Celniker, Eugene W Myers, Gary H Karpen
    posted to bioinformatics by PetrovLab on 2008-05-30 02:16:19 as ****
  • Assessing the impact of comparative genomic sequence data on the functional annotation of the Drosophila genome.
    Genome Biol, Vol. 3, No. 12. (2002)
    by CM Bergman, BD Pfeiffer, DE Rincón-Limas, RA Hoskins, A Gnirke, CJ Mungall, AM Wang, B Kronmiller, J Pacleb, S Park, M Stapleton, K Wan, RA George, PJ de Jong, J Botas, GM Rubin, SE Celniker
    posted to non-conserved drosophila comparative annotation by brant on 2008-05-13 18:58:59 as ** along with 4 people and 2 groups indigoviolet dpollard nklee cisevol EisenLab cis-regulatory-evolution
  • The Genome Sequence of Drosophila melanogaster
    Science, Vol. 287, No. 5461. (24 March 2000), pp. 2185-2195.
    by Mark D Adams, Susan E Celniker, Robert A Holt, Cheryl A Evans, Jeannine D Gocayne, Peter G Amanatides, Steven E Scherer, Peter W Li, Roger A Hoskins, Richard F Galle, Reed A George, Suzanna E Lewis, Stephen Richards, Michael Ashburner, Scott N Henderson, Granger G Sutton, Jennifer R Wortman, Mark D Yandell, Qing Zhang, Lin X Chen, Rhonda C Brandon, Yu-Hui C Rogers, Robert G Blazej, Mark Champe, Barret D Pfeiffer, Kenneth H Wan, Clare Doyle, Evan G Baxter, Gregg Helt, Catherine R Nelson, GL Gabor, Josep F Abril, Anna Agbayani, Hui-Jin An, Cynthia Andrews-Pfannkoch, Danita Baldwin, Richard M Ballew, Anand Basu, James Baxendale, Leyla Bayraktaroglu, Ellen M Beasley, Karen Y Beeson, P Benos, Benjamin P Berman, Deepali Bhandari, Slava Bolshakov, Dana Borkova, Michael R Botchan, John Bouck, Peter Brokstein, Phillipe Brottier, Kenneth C Burtis, Dana A Busam, Heather Butler, Edouard Cadieu, Angela Center, Ishwar Chandra, Michael M Cherry, Simon Cawley, Carl Dahlke, Lionel B Davenport, Peter Davies, Beatriz d Pablos, Arthur Delcher, Zuoming Deng, Anne D Mays, Ian Dew, Suzanne M Dietz, Kristina Dodson, Lisa E Doup, Michael Downes, Shannon Dugan-Rocha, Boris C Dunkov, Patrick Dunn, Kenneth J Durbin, Carlos C Evangelista, Concepcion Ferraz, Steven Ferriera, Wolfgang Fleischmann, Carl Fosler, Andrei E Gabrielian, Neha S Garg, William M Gelbart, Ken Glasser, Anna Glodek, Fangcheng Gong, Harley H Gorrell, Zhiping Gu, Ping Guan, Michael Harris, Nomi L Harris, Damon Harvey, Thomas J Heiman, Judith R Hernandez, Jarrett Houck, Damon Hostin, Kathryn A Houston, Timothy J Howland, Ming-Hui Wei, Chinyere Ibegwam, Mena Jalali, Francis Kalush, Gary H Karpen, Zhaoxi Ke, James A Kennison, Karen A Ketchum, Bruce E Kimmel, Chinnappa D Kodira, Cheryl Kraft, Saul Kravitz, David Kulp, Zhongwu Lai, Paul Lasko, Yiding Lei, Alexander A Levitsky, Jiayin Li, Zhenya Li, Yong Liang, Xiaoying Lin, Xiangjun Liu, Bettina Mattei, Tina C Mcintosh, Michael P Mcleod, Duncan Mcpherson, Gennady Merkulov, Natalia V Milshina, Clark Mobarry, Joe Morris, Ali Moshrefi, Stephen M Mount, Mee Moy, Brian Murphy, Lee Murphy, Donna M Muzny, David L Nelson, David R Nelson, Keith A Nelson, Katherine Nixon, Deborah R Nusskern, Joanne M Pacleb, Michael Palazzolo, Gjange S Pittman, Sue Pan, John Pollard, Vinita Puri, Martin G Reese, Knut Reinert, Karin Remington, Robert D Saunders, Frederick Scheeler, Hua Shen, Bixiang C Shue, Inga Sidén-Kiamos, Michael Simpson, Marian P Skupski, Tom Smith, Eugene Spier, Allan C Spradling, Mark Stapleton, Renee Strong, Eric Sun, Robert Svirskas, Cyndee Tector, Russell Turner, Eli Venter, Aihui H Wang, Xin Wang, Zhen-Yuan Wang, David A Wassarman, George M Weinstock, Jean Weissenbach, Sherita M Williams, Trevor Woodage, Kim C Worley, David Wu, Song Yang, Alison A Yao, Jane Ye, Ru-Fang Yeh, Jayshree S Zaveri, Ming Zhan, Guangren Zhang, Qi Zhao, Liansheng Zheng, Xiangqun H Zheng, Fei N Zhong, Wenyan Zhong, Xiaojun Zhou, Shiaoping Zhu, Xiaohong Zhu, Hamilton O Smith, Richard A Gibbs, Eugene W Myers, Gerald M Rubin, Craig C Venter
    posted to genome_paper drosophila by brant on 2008-04-24 04:33:54 as ** along with 7 people dragonrez RMGraze Chue treangen bluto antonkratz mimulus_99
  • Transcription Factors Bind Thousands of Active and Inactive Regions in the Drosophila Blastoderm
    PLoS Biology, Vol. 6, No. 2. (1 February 2008), e27.
    by Xiao-Yong Li, Stewart Macarthur, Richard Bourgon, David Nix, Daniel A Pollard, Venky N Iyer, Aaron Hechmer, Lisa Simirenko, Mark Stapleton, Cris L Hendriks, Hou C Chu, Nobuo Ogawa, William Inwood, Victor Sementchenko, Amy Beaton, Richard Weiszmann, Susan E Celniker, David W Knowles, Tom Gingeras, Terence P Speed, Michael B Eisen, Mark D Biggin
    posted to drosophila chip-chip by brant on 2008-04-24 04:29:59 as ** along with 4 people kengg maximilianh caseybrown emptyhb
  • Exploiting transcription factor binding site clustering to identify cis-regulatory modules involved in pattern formation in the Drosophila genome.
    Proc Natl Acad Sci U S A, Vol. 99, No. 2. (22 January 2002), pp. 757-762.
    by BP Berman, Y Nibu, BD Pfeiffer, P Tomancak, SE Celniker, M Levine, GM Rubin, MB Eisen
    posted to no-tag by csdhwang on 2008-03-28 09:35:22 as ** along with 3 people and 1 group indigoviolet Stew emptyhb EisenLab
  • Phylogenetic and genomewide analyses suggest a functional relationship between kayak, the Drosophila fos homolog, and fig, a predicted protein phosphatase 2c nested within a kayak intron.
    Genetics, Vol. 177, No. 3. (November 2007), pp. 1349-1361.
    by SG Hudson, MJ Garrett, JW Carlson, G Micklem, SE Celniker, ES Goldstein, SJ Newfeld
    posted to drosophila overlapping_gene by cisevol to the group BergmanLab on 2008-03-28 07:23:37 as **
  • Benchmarking tools for the alignment of functional noncoding DNA.
    BMC Bioinformatics, Vol. 5 (21 January 2004)
    by DA Pollard, CM Bergman, J Stoye, SE Celniker, MB Eisen
    posted to alignment by gjuggler on 2008-03-19 18:34:36 as ** along with 4 people and 1 group indigoviolet lilou adijr idonaldson EisenLab
  • Development of the Indirect Flight Muscle Attachment Sites inDrosophila:Role of the PS Integrins and thestripeGene
    Developmental Biology, Vol. 176, No. 2. (15 June 1996), pp. 166-184.
    by Joyce J Fernandes, Susan E Celniker, K Vijayraghavan
    posted to muscle by soojin on 2008-02-15 04:02:38 as **
  • Global analysis of patterns of gene expression during Drosophila embryogenesis
    Genome Biology, Vol. 8 (23 July 2007), R145.
    by Pavel Tomancak, Benjamin P Berman, Amy Beaton, Richard Weiszmann, Elaine Kwan, Volker Hartenstein, Susan E Celniker, Gerald M Rubin
    posted to cisreg database melanogaster transcription by caseybrown on 2008-02-05 16:42:09 as read along with 1 person and 1 group dpollard EisenLab
  • Comparative Analysis of Spatial Patterns of Gene Expression in Drosophila melanogaster Imaginal Discs
    Research in Computational Molecular Biology (2007), pp. 533-547.
    by Cyrus Harmon, Parvez Ahammad, Ann Hammonds, Richard Weiszmann, Susan Celniker, S Sastry, Gerald Rubin
    posted to no-tag by dlmace on 2008-01-28 00:23:49 as **
  • Systematic determination of patterns of gene expression during Drosophila embryogenesis.
    Genome Biol, Vol. 3, No. 12. (2002)
    by P Tomancak, A Beaton, R Weiszmann, E Kwan, S Shu, SE Lewis, S Richards, M Ashburner, V Hartenstein, SE Celniker, GM Rubin
    posted to imaging by dlmace on 2008-01-17 21:32:22 as ** along with 5 people and 2 groups briann RMGraze indigoviolet eukfn wrowell EisenLab Cline_lab
  • The genome sequence of Drosophila melanogaster.
    Science, Vol. 287, No. 5461. (24 March 2000), pp. 2185-2195.
    by MD Adams, SE Celniker, RA Holt, CA Evans, JD Gocayne, PG Amanatides, SE Scherer, PW Li, RA Hoskins, RF Galle, RA George, SE Lewis, S Richards, M Ashburner, SN Henderson, GG Sutton, JR Wortman, MD Yandell, Q Zhang, LX Chen, RC Brandon, YH Rogers, RG Blazej, M Champe, BD Pfeiffer, KH Wan, C Doyle, EG Baxter, G Helt, CR Nelson, GL Gabor, JF Abril, A Agbayani, HJ An, C Andrews-Pfannkoch, D Baldwin, RM Ballew, A Basu, J Baxendale, L Bayraktaroglu, EM Beasley, KY Beeson, PV Benos, BP Berman, D Bhandari, S Bolshakov, D Borkova, MR Botchan, J Bouck, P Brokstein, P Brottier, KC Burtis, DA Busam, H Butler, E Cadieu, A Center, I Chandra, JM Cherry, S Cawley, C Dahlke, LB Davenport, P Davies, B de Pablos, A Delcher, Z Deng, AD Mays, I Dew, SM Dietz, K Dodson, LE Doup, M Downes, S Dugan-Rocha, BC Dunkov, P Dunn, KJ Durbin, CC Evangelista, C Ferraz, S Ferriera, W Fleischmann, C Fosler, AE Gabrielian, NS Garg, WM Gelbart, K Glasser, A Glodek, F Gong, JH Gorrell, Z Gu, P Guan, M Harris, NL Harris, D Harvey, TJ Heiman, JR Hernandez, J Houck, D Hostin, KA Houston, TJ Howland, MH Wei, C Ibegwam, M Jalali, F Kalush, GH Karpen, Z Ke, JA Kennison, KA Ketchum, BE Kimmel, CD Kodira, C Kraft, S Kravitz, D Kulp, Z Lai, P Lasko, Y Lei, AA Levitsky, J Li, Z Li, Y Liang, X Lin, X Liu, B Mattei, TC McIntosh, MP McLeod, D McPherson, G Merkulov, NV Milshina, C Mobarry, J Morris, A Moshrefi, SM Mount, M Moy, B Murphy, L Murphy, DM Muzny, DL Nelson, DR Nelson, KA Nelson, K Nixon, DR Nusskern, JM Pacleb, M Palazzolo, GS Pittman, S Pan, J Pollard, V Puri, MG Reese, K Reinert, K Remington, RD Saunders, F Scheeler, H Shen, BC Shue, I Sidén-Kiamos, M Simpson, MP Skupski, T Smith, E Spier, AC Spradling, M Stapleton, R Strong, E Sun, R Svirskas, C Tector, R Turner, E Venter, AH Wang, X Wang, ZY Wang, DA Wassarman, GM Weinstock, J Weissenbach, SM Williams, WoodageT, KC Worley, D Wu, S Yang, QA Yao, J Ye, RF Yeh, JS Zaveri, M Zhan, G Zhang, Q Zhao, L Zheng, XH Zheng, FN Zhong, W Zhong, X Zhou, S Zhu, X Zhu, HO Smith, RA Gibbs, EW Myers, GM Rubin, JC Venter
    posted to no-tag by hplatero on 2008-01-07 22:06:51 as ** along with 7 people sdinka Cortel jwortman Dax42 jackjackjjj yulian2108 nklee
  • Drosophila DNase I footprint database: a systematic genome annotation of transcription factor binding sites in the fruitfly, Drosophila melanogaster.
    Bioinformatics, Vol. 21, No. 8. (15 April 2005), pp. 1747-1749.
    by CM Bergman, JW Carlson, SE Celniker
    posted to no-tag by indigoviolet to the group EisenLab on 2007-12-12 14:40:40 as ** along with 1 person and 1 group yas T_lab
  • The transposable elements of the Drosophila melanogaster euchromatin: a genomics perspective.
    Genome Biol, Vol. 3, No. 12. (2002)
    by JS Kaminker, CM Bergman, B Kronmiller, J Carlson, R Svirskas, S Patel, E Frise, DA Wheeler, SE Lewis, GM Rubin, M Ashburner, SE Celniker
    posted to no-tag by mimulus_99 on 2007-12-04 00:50:41 as read along with 1 person briann
  • Revisiting the protein-coding gene catalog of Drosophila melanogaster using 12 fly genomes
    Genome Res. (7 November 2007), gr.6679507.
    by Michael F Lin, Joseph W Carlson, Madeline A Crosby, Beverley B Matthews, Charles Yu, Soo Park, Kenneth H Wan, Andrew J Schroeder, Sian L Gramates, Susan E St. Pierre, Margaret Roark, Kenneth L Wiley, Rob J Kulathinal, Peili Zhang, Kyl V Myrick, Jerry V Antone, Susan E Celniker, William M Gelbart, Manolis Kellis
    posted to comparative drosophila genomics by nitiniitk on 2007-11-12 00:25:02 as **
  • High-throughput plasmid cDNA library screening.
    Nat Protoc, Vol. 1, No. 2. (2006), pp. 624-632.
    by KH Wan, C Yu, RA George, JW Carlson, RA Hoskins, R Svirskas, M Stapleton, SE Celniker
    posted to no-tag by jyuh on 2007-11-02 03:42:34 as **
  • Sequence Finishing and Mapping of Drosophila melanogaster Heterochromatin
    Science, Vol. 316, No. 5831. (15 June 2007), pp. 1625-1628.
    by Roger A Hoskins, Joseph W Carlson, Cameron Kennedy, David Acevedo, Martha Evans-Holm, Erwin Frise, Kenneth H Wan, Soo Park, Maria Mendez-Lago, Fabrizio Rossi, Alfredo Villasante, Patrizio Dimitri, Gary H Karpen, Susan E Celniker
    posted to genomic heterochromatin by cabbagezs on 2007-07-21 17:00:20 as ** along with 1 person epigenetics
  • A computational and experimental approach to validating annotations and gene predictions in the Drosophila melanogaster genome.
    Proc Natl Acad Sci U S A, Vol. 102, No. 5. (1 February 2005), pp. 1566-1571.
    by M Yandell, AM Bailey, S Misra, S Shu, C Wiel, M Evans-Holm, SE Celniker, GM Rubin
    posted to annotation drosophila by jwortman on 2005-05-11 19:59:13 as ***
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