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Autor Botstein [76 articles]

Neu eingetragene Papers vom Autor: Botstein.
  • Gene ontology: tool for the unification of biology. The Gene Ontology Consortium.
    Nat Genet, Vol. 25, No. 1. (May 2000), pp. 25-29.
    by M Ashburner, CA Ball, JA Blake, D Botstein, H Butler, JM Cherry, AP Davis, K Dolinski, SS Dwight, JT Eppig, MA Harris, DP Hill, L Issel-Tarver, A Kasarskis, S Lewis, JC Matese, JE Richardson, M Ringwald, GM Rubin, G Sherlock
    posted to gene-ontology by dgront on 2008-06-30 19:02:01 as read along with 31 people and 5 groups marck carlk pablomendes CitoJam aalibes miguel dragonrez lfriedl chad_davis yas balajis indigoviolet benny dullhunk nirfriedman fisherp caporaso helliontroy zlu gurkanbebek djkt massivemayhem incovoma leechuck aconesa sgoetz javamint bootsy PunkRock natstreet naegele kdl Bioinformatics EisenLab T_lab biomedical-nlp
  • Module networks: identifying regulatory modules and their condition-specific regulators from gene expression data.
    Nat Genet, Vol. 34, No. 2. (June 2003), pp. 166-176.
    by E Segal, M Shapira, A Regev, D Pe'er, D Botstein, D Koller, N Friedman
    posted to yeast networks expression by chrisamiller on 2008-06-26 21:41:00 as * along with 13 people pkm tvdbulck dragonrez tuck bayesian wnpx tabu koller olympos fishtank dimatura karfunkel roys
  • Comprehensive curation and analysis of global interaction networks in Saccharomyces cerevisiae
    Journal of Biology, Vol. 5, No. 4. (08 June 2006), 11.
    by Teresa Reguly, Ashton Breitkreutz, Lorrie Boucher, Bobby-Joe Breitkreutz, Gary C Hon, Chad L Myers, Ainslie Parsons, Helena Friesen, Rose Oughtred, Amy Tong, Chris Stark, Yuen Ho, David Botstein, Brenda Andrews, Charles Boone, Olga G Troyanskya, Trey Ideker, Kara Dolinski, Nizar N Batada, Mike Tyers
    posted to databases biogrid by chasmand on 2008-06-26 19:16:59 as read along with 17 people and 3 groups snuppepuppan tmmurali lfriedl balajis wnpx nickluscombe egralla citecat noano koller grahamc iris_2001 sgoetz shikin s041629 pmendes mtruksa kdl EBI-regulation GeneGo
  • A Bayesian framework for combining heterogeneous data sources for gene function prediction (in Saccharomyces cerevisiae).
    Proc Natl Acad Sci U S A, Vol. 100, No. 14. (8 July 2003), pp. 8348-8353.
    by OG Troyanskaya, K Dolinski, AB Owen, RB Altman, D Botstein
    posted to gene_ontology bayesian_network bayesian_integration by frohike on 2008-06-25 09:01:18 as ** along with 17 people and 2 groups kallberg srp33 carlk isimpson BioGeek serak dragonrez okarsligil lfriedl balajis eckart_bindewald eweaver luispedro opheliav wnpx nedwards Evangelia kdl Bioinformatics
  • Molecular portraits of human breast tumours.
    Nature, Vol. 406, No. 6797. (17 August 2000), pp. 747-752.
    by CM Perou, T Sørlie, MB Eisen, M van de Rijn, SS Jeffrey, CA Rees, JR Pollack, DT Ross, H Johnsen, LA Akslen, O Fluge, A Pergamenschikov, C Williams, SX Zhu, PE Lønning, AL Børresen-Dale, PO Brown, D Botstein
    posted to no-tag by evaf on 2008-06-11 11:31:05 as ** along with 2 people jfr frohike
  • Gene expression patterns of breast carcinomas distinguish tumor subclasses with clinical implications
    PNAS, Vol. 98, No. 19. (11 September 2001), pp. 10869-10874.
    by Therese Sorlie, Charles M Perou, Robert Tibshirani, Turid Aas, Stephanie Geisler, Hilde Johnsen, Trevor Hastie, Michael B Eisen, Matt van de Rijn, Stefanie S Jeffrey, Thor Thorsen, Hanne Quist, John C Matese, Patrick O Brown, David Botstein, Per E Lonning, Anne-Lise Borresen-Dale
    posted to no-tag by evaf on 2008-06-11 11:30:15 as ** along with 3 people jfr frohike macavity1g
  • Diversity of gene expression in adenocarcinoma of the lung.
    Proceedings of the National Academy of Sciences of the United States of America, Vol. 98, No. 24. (20 November 2001), pp. 13784-13789.
    by ME Garber, OG Troyanskaya, K Schluens, S Petersen, Z Thaesler, M Pacyna-Gengelbach, M van de Rijn, GD Rosen, CM Perou, RI Whyte, RB Altman, PO Brown, D Botstein, I Petersen
    posted to no-tag by evaf on 2008-06-11 11:28:29 as **
  • Variation in gene expression patterns in follicular lymphoma and the response to rituximab.
    Proc Natl Acad Sci U S A, Vol. 100, No. 4. (18 February 2003), pp. 1926-1930.
    by SP Bohen, OG Troyanskaya, O Alter, R Warnke, D Botstein, PO Brown, R Levy
    posted to microarray by evaf on 2008-06-11 09:55:58 as read along with 1 person lhonigberg
  • A DNA microarray survey of gene expression in normal human tissues.
    Genome Biol, Vol. 6, No. 3. (2005)
    by R Shyamsundar, YH Kim, JP Higgins, K Montgomery, M Jorden, A Sethuraman, M van de Rijn, D Botstein, PO Brown, JR Pollack
    posted to tissue normal_expression microarray by frohike on 2008-06-09 16:47:47 as ** along with 1 person cjeans
  • Gene Ontology annotations at SGD: new data sources and annotation methods
    Nucl. Acids Res. (3 November 2007), gkm909.
    by Eurie L Hong, Rama Balakrishnan, Qing Dong, Karen R Christie, Julie Park, Gail Binkley, Maria C Costanzo, Selina S Dwight, Stacia R Engel, Dianna G Fisk, Jodi E Hirschman, Benjamin C Hitz, Cynthia J Krieger, Michael S Livstone, Stuart R Miyasato, Robert S Nash, Rose Oughtred, Marek S Skrzypek, Shuai Weng, Edith D Wong, Kathy K Zhu, Kara Dolinski, David Botstein, Michael J Cherry
    posted to yeast go by carlk on 2008-06-03 16:09:27 as ** along with 1 person hplatero
  • Mapping mendelian factors underlying quantitative traits using RFLP linkage maps.
    Genetics, Vol. 121, No. 1. (January 1989), pp. 185-199.
    by ES Lander, D Botstein
    posted to seminal_paper rockman_journal_club qtl interval_mapping by dpollard to the group RockmanLab on 2008-05-22 21:34:29 as ***** along with 4 people Ayest raiyar lp2 mcgannd
  • Comprehensive identification of cell cycle-regulated genes of the yeast Saccharomyces cerevisiae by microarray hybridization.
    Mol Biol Cell, Vol. 9, No. 12. (December 1998), pp. 3273-3297.
    by PT Spellman, G Sherlock, MQ Zhang, VR Iyer, K Anders, MB Eisen, PO Brown, D Botstein, B Futcher
    posted to no-tag by tvdbulck on 2008-05-20 15:58:34 as ** along with 9 people and 1 group lfriedl balajis nirfriedman jacky957 johncumbers timflutre bootsy mimulus_99 dbenn kdl
  • A systematic approach to reconstructing transcription networks in Saccharomycescerevisiae
    Proceedings of the National Academy of Sciences, Vol. 99, No. 26. (24 December 2002), pp. 16893-16898.
    by Wei Wang, Michael J Cherry, David Botstein, Hao Li
    posted to no-tag by tvdbulck on 2008-05-20 15:56:42 as **
  • Cluster analysis and display of genome-wide expression patterns.
    Proc Natl Acad Sci U S A, Vol. 95, No. 25. (8 December 1998), pp. 14863-14868.
    by MB Eisen, PT Spellman, PO Brown, D Botstein
    posted to no-tag by tvdbulck on 2008-05-20 14:12:19 as ** along with 18 people and 3 groups jo_davies macowell ggrot miguel textoris okarsligil pcahan1 lfriedl balajis nuke2005 lyongu maryee wnpx nirfriedman dquest karfunkel dps kintoki kdl Bioinformatics BUiGEM
  • Genomic expression programs in the response of yeast cells to environmental changes.
    Mol Biol Cell, Vol. 11, No. 12. (December 2000), pp. 4241-4257.
    by AP Gasch, PT Spellman, CM Kao, O Carmel-Harel, MB Eisen, G Storz, D Botstein, PO Brown
    posted to no-tag by tvdbulck on 2008-05-19 18:51:44 as ** along with 4 people and 2 groups lfriedl lesander raiyar roys kdl steinmetzlab
  • Gene expression profiling reveals molecularly and clinically distinct subtypes of glioblastoma multiforme
    Proceedings of the National Academy of Sciences, Vol. 102, No. 16. (19 April 2005), pp. 5814-5819.
    by Yu Liang, Maximilian Diehn, Nathan Watson, Andrew W Bollen, Ken D Aldape, Kelly M Nicholas, Kathleen R Lamborn, Mitchel S Berger, David Botstein, Patrick O Brown, Mark A Israel
    posted to brain_cancer by srp33 on 2008-05-17 01:05:41 as **
  • Distinct types of diffuse large B-cell lymphoma identified by gene expression profiling
    Nature, Vol. 403, No. 6769. (03 February 2000), pp. 503-511.
    by Ash A Alizadeh, Michael B Eisen, Eric E Davis, Chi Ma, Izidore S Lossos, Andreas Rosenwald, Jennifer C Boldrick, Hajeer Sabet, Truc Tran, Xin Yu, John I Powell, Liming Yang, Gerald E Marti, Troy Moore, James Hudson, Lisheng Lu, David B Lewis, Robert Tibshirani, Gavin Sherlock, Wing C Chan, Timothy C Greiner, Dennis D Weisenburger, James O Armitage, Roger Warnke, Ronald Levy, Wyndham Wilson, Michael R Grever, John C Byrd, David Botstein, Patrick O Brown, Louis M Staudt
    posted to no-tag by jo_davies on 2008-05-01 16:09:44 as ** along with 3 people and 1 group ggrot bedo giovanni GeschwindLab
  • Comparing whole genomes using DNA microarrays
    Nat Rev Genet, Vol. 9, No. 4. (April 2008), pp. 291-302.
    by David Gresham, Maitreya J Dunham, David Botstein
    posted to microarray by thomaskelder on 2008-04-30 19:46:30 as ** along with 5 people giovenko shinetmt jo_davies jyuh zwang
  • Discovering genotypes underlying human phenotypes: past successes for mendelian disease, future approaches for complex disease.
    Nat Genet, Vol. 33 Suppl (March 2003), pp. 228-237.
    by D Botstein, N Risch
    posted to no-tag by jo_davies on 2008-04-30 10:39:05 as ** along with 2 people raiyar massivemayhem
  • Repeated observation of breast tumor subtypes in independent gene expression data sets.
    Proc Natl Acad Sci U S A, Vol. 100, No. 14. (8 July 2003), pp. 8418-8423.
    by T Sorlie, R Tibshirani, J Parker, T Hastie, JS Marron, A Nobel, S Deng, H Johnsen, R Pesich, S Geisler, J Demeter, CM Perou, PE Lønning, PO Brown, AL Børresen-Dale, D Botstein
    posted to no-tag by jo_davies on 2008-04-29 19:08:23 as ** along with 1 person jfr
  • Introductory Science and Mathematics Education for 21st-Century Biologists
    Science, Vol. 303, No. 5659. (6 February 2004), pp. 788-790.
    by William Bialek, David Botstein
    posted to systems_biology modelling by lenov on 2008-04-28 13:25:08 as ** along with 1 person jsvoboda
  • Yeast: an experimental organism for modern biology
    Science, Vol. 240, No. 4858. (10 June 1988), pp. 1439-1443.
    by D Botstein, GR Fink
    posted to eukaryotes botstein-88 by CitoJam on 2008-04-26 12:57:23 as *
  • Functional analysis of the genes of yeast chromosome V by genetic footprinting.
    Science (New York, N.Y.), Vol. 274, No. 5295. (20 December 1996), pp. 2069-2074.
    by V Smith, KN Chou, D Lashkari, D Botstein, PO Brown
    posted to yeast by jiny on 2008-04-25 01:35:00 as **
  • Homeostatic adjustment and metabolic remodeling in glucose-limited yeast cultures.
    Mol Biol Cell, Vol. 16, No. 5. (May 2005), pp. 2503-2517.
    by MJ Brauer, AJ Saldanha, K Dolinski, D Botstein
    posted to diauxic-shift gene-expression yeast by michaelbarton on 2008-04-22 13:39:59 as ** along with 1 person dbenn
  • Conservation of the metabolomic response to starvation across two divergent microbes.
    Proceedings of the National Academy of Sciences of the United States of America, Vol. 103, No. 51. (19 December 2006), pp. 19302-19307.
    by MJ Brauer, J Yuan, BD Bennett, W Lu, E Kimball, D Botstein, JD Rabinowitz
    posted to yeast by fishtank on 2008-04-18 00:34:23 as read
  • Changing perspectives in yeast research nearly a decade after the genome sequence.
    Genome Res, Vol. 15, No. 12. (December 2005), pp. 1611-1619.
    by K Dolinski, D Botstein
    posted to yeast by fishtank on 2008-04-10 01:26:45 as read along with 3 people and 1 group lfriedl nirfriedman dmc kdl
  • Singular value decomposition for genome-wide expression data processing and modeling.
    Proc Natl Acad Sci U S A, Vol. 97, No. 18. (29 August 2000), pp. 10101-10106.
    by O Alter, PO Brown, D Botstein
    posted to expression by lp2 on 2008-04-06 14:44:37 as ** along with 5 people and 1 group balajis ccpin justescaped akastrin pazpark PTT
  • Characteristic genome rearrangements in experimental evolution of Saccharomycescerevisiae
    Proceedings of the National Academy of Sciences, Vol. 99, No. 25. (10 December 2002), pp. 16144-16149.
    by Maitreya J Dunham, Hassan Badrane, Tracy Ferea, Julian Adams, Patrick O Brown, Frank Rosenzweig, David Botstein
    posted to lab-evolution by westoll on 2008-04-04 12:29:35 as **
  • notes Genome-Wide Analysis of Nucleotide-Level Variation in Commonly Used Saccharomyces cerevisiae Strains.
    PLoS ONE, Vol. 2 (2007)
    by J Schacherer, DM Ruderfer, D Gresham, K Dolinski, D Botstein, L Kruglyak
    posted to 2008-2-mdb 2008-3-mdb genetic-variation insertion-deletion mutation reviewed snp tiling-array yeast by michaelbarton on 2008-04-01 16:27:55 as read along with 2 people and 1 group stajich dmc Durbin group
  • SGD: Saccharomyces Genome Database.
    Nucleic Acids Res, Vol. 26, No. 1. (1 January 1998), pp. 73-79.
    by JM Cherry, C Adler, C Ball, SA Chervitz, SS Dwight, ET Hester, Y Jia, G Juvik, T Roe, M Schroeder, S Weng, D Botstein
    posted to yeast by nklee on 2008-04-01 03:35:40 as ** along with 3 people and 1 group irenas RMGraze lusk dbk-lab
  • Construction of a genetic linkage map in man using restriction fragment length polymorphisms.
    Am J Hum Genet, Vol. 32, No. 3. (May 1980), pp. 314-331.
    by D Botstein, RL White, M Skolnick, RW Davis
    posted to no-tag by jo_davies on 2008-03-28 15:14:32 as ** along with 3 people sdinka raiyar ggorjan
  • 'Gene shaving' as a method for identifying distinct sets of genes with similar expression patterns
    Genome Biology, Vol. 1, No. 2. (2000), pp. research0003.1-research0003.21.
    by Trevor Hastie, Robert Tibshirani, Michael Eisen, Ash Alizadeh, Ronald Levy, Louis Staudt, Wing Chan, David Botstein, Patrick Brown
    posted to microarray pca svd by ghattem on 2008-03-17 15:27:46 as ***
  • The Gene Ontology (GO) database and informatics resource.
    Nucleic Acids Res, Vol. 32, No. Database issue. (1 January 2004)
    by MA Harris, J Clark, A Ireland, J Lomax, M Ashburner, R Foulger, K Eilbeck, S Lewis, B Marshall, C Mungall, J Richter, GM Rubin, JA Blake, C Bult, M Dolan, H Drabkin, JT Eppig, DP Hill, L Ni, M Ringwald, R Balakrishnan, JM Cherry, KR Christie, MC Costanzo, SS Dwight, S Engel, DG Fisk, JE Hirschman, EL Hong, RS Nash, A Sethuraman, CL Theesfeld, D Botstein, K Dolinski, B Feierbach, T Berardini, S Mundodi, SY Rhee, R Apweiler, D Barrell, E Camon, E Dimmer, V Lee, R Chisholm, P Gaudet, W Kibbe, R Kishore, EM Schwarz, P Sternberg, M Gwinn, L Hannick, J Wortman, M Berriman, V Wood, N de la Cruz, P Tonellato, P Jaiswal, T Seigfried, R White,
    posted to tesi by talponer on 2008-03-04 17:21:30 as ** along with 8 people and 1 group setar balajis nuke2005 benny dullhunk bundschu sgoetz waghsk generif_paper
  • GO::TermFinder-open source software for accessing Gene Ontology information and finding significantly enriched Gene Ontology terms associated with a list of genes
    Bioinformatics, Vol. 20, No. 18., 3710.
    by Elizabeth I Boyle, Shuai Weng, Jeremy Gollub, Heng Jin, David Botstein, Michael M Cherry, Gavin Sherlock
    posted to array by kintoki on 2008-02-08 00:18:57 as ** along with 2 people cjeans macavity1g
  • Systematic mutational analysis of the yeast ACT1 gene.
    Genetics, Vol. 132, No. 2. (October 1992), pp. 337-350.
    by KF Wertman, DG Drubin, D Botstein
    posted to structure-function-analysis by DNAReplication on 2008-02-06 03:25:29 as ** along with 1 person blaine_5
  • Module Networks: Discovering Regulatory Modules and their Condition Specific Regulators from Gene Expression Data
    Nature Genetics, Vol. 34, No. 2. (June 2003)
    by Eran Segal, Michael Shapira, Aviv Regev, Dana Pe'er, David Botstein, Daphne Koller, Nir Friedman
    posted to expression networks regulation by lp2 on 2008-02-01 12:00:36 as ** along with 2 people wnpx dimatura
  • Missing value estimation methods for DNA microarrays.
    Bioinformatics, Vol. 17, No. 6. (June 2001), pp. 520-525.
    by Olga Troyanskaya, Michael Cantor, Gavin Sherlock, Pat Brown, Trevor Hastie, Robert Tibshirani, David Botstein, Russ B Altman
    posted to microarray missing_values by naegele on 2008-01-17 08:52:50 as ** along with 2 people btiwari lyongu
  • Three cell wall mannoproteins facilitate the uptake of iron in Saccharomyces cerevisiae
    The Journal of Biological Chemistry, Vol. 276, No. 52. (22 October 2001), pp. 49244-50.
    by Olga Protchenko, Tracey Ferea, Jared Rashford, John Tiedeman, Patrick O Brown, David Botstein, Caroline C Philpott
    posted to iron_homeostasis regulatory_network yeast by naegele on 2008-01-11 09:27:24 as *
  • Role of thioredoxin reductase in the Yap1p-dependent response to oxidative stress in Saccharomyces cerevisiae.
    Mol Microbiol, Vol. 39, No. 3. (February 2001), pp. 595-605.
    by O Carmel-Harel, R Stearman, AP Gasch, D Botstein, PO Brown, G Storz
    posted to no-tag by hplatero on 2007-12-20 21:38:49 as **
  • The transcriptional program of sporulation in budding yeast.
    Science, Vol. 282, No. 5389. (23 October 1998), pp. 699-705.
    by S Chu, J DeRisi, M Eisen, J Mulholland, D Botstein, PO Brown, I Herskowitz
    posted to sporulation by dbenn on 2007-12-20 17:33:39 as ** along with 2 people and 1 group lfriedl srfairclough kdl
  • Gene expression profiling identifies clinically relevant subtypes of prostate cancer.
    Proc Natl Acad Sci U S A, Vol. 101, No. 3. (20 January 2004), pp. 811-816.
    by J Lapointe, C Li, JP Higgins, M van de Rijn, E Bair, K Montgomery, M Ferrari, L Egevad, W Rayford, U Bergerheim, P Ekman, AM DeMarzo, R Tibshirani, D Botstein, PO Brown, JD Brooks, JR Pollack
    posted to no-tag by tenaciousz425 on 2007-12-08 00:11:58 as read along with 1 person jfr
  • Genome-Wide Detection of Polymorphisms at Nucleotide Resolution with a Single DNA Microarray
    Science, Vol. 311, No. 5769. (31 March 2006), pp. 1932-1936.
    by David Gresham, Douglas M Ruderfer, Stephen C Pratt, Joseph Schacherer, Maitreya J Dunham, David Botstein, Leonid Kruglyak
    posted to snp by vesper on 2007-12-07 19:01:31 as **** along with 8 people and 3 groups stevanspringer ccots RMGraze dchughes gandhih nirfriedman Billemann djkt FAB-lab G4ID Genetics-of-Gambling
  • Coordination of Growth Rate, Cell Cycle, Stress Response, and Metabolic Activity in Yeast.
    Mol Biol Cell (24 October 2007)
    by Matthew J J Brauer, Curtis Huttenhower, Edoardo M M Airoldi, Rachel Rosenstein, John C C Matese, David Gresham, Viktor M M Boer, Olga G G Troyanskaya, David Botstein
    posted to glucose_limit_botstein by dbenn on 2007-11-29 20:27:27 as **
  • The Princeton Protein Orthology Database (P-POD): a comparative genomics analysis tool for biologists.
    PLoS ONE, Vol. 2, No. 1. (2007)
    by S Heinicke, MS Livstone, C Lu, R Oughtred, F Kang, SV Angiuoli, O White, D Botstein, K Dolinski
    posted to no-tag by jyuh on 2007-11-24 03:44:40 as **
  • Comparison of the Complete Protein Sets of Worm and Yeast: Orthology and Divergence
    Science, Vol. 282, No. 5396. (11 December 1998), pp. 2022-2028.
    by Stephen A Chervitz, L Aravind, Gavin Sherlock, Catherine A Ball, Eugene V Koonin, Selina S Dwight, Midori A Harris, Kara Dolinski, Scott Mohr, Temple Smith, Shuai Weng, Michael J Cherry, David Botstein
    posted to proteome_comparison by roys on 2007-11-10 19:19:40 as **
  • Saccharomyces genome database: underlying principles and organisation.
    Briefings in Bioinformatics, Vol. 5, No. 1. (March 2004), pp. 9-22.
    by SS Dwight, R Balakrishnan, KR Christie, MC Costanzo, K Dolinski, SR Engel, B Feierbach, DG Fisk, J Hirschman, EL Hong, L Issel-Tarver, RS Nash, A Sethuraman, B Starr, CL Theesfeld, R Andrada, G Binkley, Q Dong, C Lane, M Schroeder, S Weng, D Botstein, JM Cherry
    posted to bib sgd by dullhunk on 2007-11-02 18:27:50 as ** along with 1 person and 1 group irenas dbk-lab
  • Back to the future: education for systems-level biologists
    Nature Reviews Molecular Cell Biology, Vol. 7, No. 11. (20 September 2006), pp. 829-832.
    by Ned Wingreen, David Botstein
    posted to systems_biology by margaritis on 2007-10-30 17:25:07 as **
  • Chromosome instability mutants of Saccharomyces cerevisiae that are defective in microtubule-mediated processes.
    Mol Cell Biol, Vol. 10, No. 1. (January 1990), pp. 223-234.
    by MA Hoyt, T Stearns, D Botstein
    posted to arl2 tubulin by laurabailey on 2007-09-27 11:34:06 as **
  • Transcriptional response of steady-state yeast cultures to transient perturbations in carbon source
    Proceedings of the National Academy of Sciences, Vol. 103, No. 2. (10 January 2006), pp. 389-394.
    by Michal Ronen, David Botstein
    posted to glucose hxt microarray mrna_levels by arne on 2007-09-19 13:55:13 as **** along with 1 group dIEMoSIRIS
  • A group of interacting yeast DNA replication genes.
    Genes Dev., Vol. 5, No. 6. (1 June 1991), pp. 958-969.
    by KM Hennessy, A Lee, E Chen, D Botstein
    posted to 7me-next my paper by rsingh on 2007-08-28 02:18:46 as **
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